| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,118,887 – 4,118,993 |
| Length | 106 |
| Max. P | 0.630187 |
| Location | 4,118,887 – 4,118,993 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 92.00 |
| Mean single sequence MFE | -28.63 |
| Consensus MFE | -21.35 |
| Energy contribution | -22.47 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4118887 106 + 20766785 ACAAUUG--UGGUGGUUGGUCACUGACGACGAGUCGCCUUAGUUUCAAGACAAUCAGGCGACAGCUCCGACUACCAAUUAUGGC---CAAACAAAACACUUGAAAAAUUAA .(((.((--((((((((((((......)))..(((((((..(((....)))....))))))).....)))))))).....((..---....))..))).)))......... ( -29.90) >DroSim_CAF1 31920 108 + 1 ACAAUUGUGUGGUGGUUGGUCACUGA---CGAGUCGCCUUAGUUUCAAGACAAUCAGGCGACAGCUCCGACUACCAAUUAUGGCCACCAAACAAAACACUUGAAAAAUUAA .(((.(((.((((((((((((.....---.))(((((((..(((....)))....)))))))....))))))))))....(((...)))......))).)))......... ( -30.40) >DroYak_CAF1 15924 99 + 1 ACAAUUG--UGGU----GGUCACUGA---CGAGUCGCCUUAGUUUCAAGACAAUCAGGCGACAGCUUCGACUACCAAUUAUGGC---CAAACAAAACACUUGAAAAAUUAA .(((.((--((((----((((...(.---(..(((((((..(((....)))....))))))).))...))))))).....((..---....))..))).)))......... ( -25.60) >consensus ACAAUUG__UGGUGGUUGGUCACUGA___CGAGUCGCCUUAGUUUCAAGACAAUCAGGCGACAGCUCCGACUACCAAUUAUGGC___CAAACAAAACACUUGAAAAAUUAA .........((((((((((((.........))(((((((..(((....)))....)))))))....))))))))))................................... (-21.35 = -22.47 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:08 2006