Locus 967

Sequence ID 2R_DroMel_CAF1
Location 4,113,421 – 4,113,538
Length 117
Max. P 0.976267
window1721

overview

Window 1

Location 4,113,421 – 4,113,538
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.68
Mean single sequence MFE -42.93
Consensus MFE -34.33
Energy contribution -35.81
Covariance contribution 1.48
Combinations/Pair 1.06
Mean z-score -2.31
Structure conservation index 0.80
SVM decision value 1.77
SVM RNA-class probability 0.976267
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4113421 117 - 20766785
GCAUAAGCGCGCAAAAUGCGCGGCACACUUUU--CUCAAUAUUUCGCGUUGUGUGCCAUUGCGCCGUUAUUUUGAAGGUCAAGUGACCAGGGGAACCUUUACCGGAACUAGCGGCG-CCC
((....))((((.....))))(((((((....--................)))))))...((((((((((((((..((((....))))(((....)))....))))).))))))))-).. ( -48.35)
>DroSim_CAF1 24962 117 - 1
GCAUGAGCGCGCAAAAUGCGCGGCACACUUUU--CUCAAUAUUUCGCGUUGUGUGCCAUUGCGCCGUUAUUUUGAAGGUCAAGUGACCAGGGAAACCUUUACCGGAACUAGCGGCG-CCC
((....))((((.....))))(((((((....--................)))))))...((((((((((((((..((((....))))(((....)))....))))).))))))))-).. ( -49.85)
>DroEre_CAF1 4172 117 - 1
GCAUGAGCGCGCAAAAUGCGCGGCACACUUUA--CUCAAUAUUUCGCGUUGUGUGCCAUUGCGCCGUUAUUUUGAAGGUCAAGUGACCAGGAGAACCUUUUCCGGAACUAGCUGCG-GCC
(((.....((((.....))))(((((((...(--(.(........).)).)))))))..)))(((((.........((((....)))).(((((....)))))..........)))-)). ( -41.80)
>DroYak_CAF1 10619 111 - 1
GCAUGAGCGCGCAAAAUGCGCGGCACACUUUU--CUCAAUAUUUCGCGUUGUGU------GCGCCGUUAUUUUGAAGGUCAAGUGACCAGGGGAACCUUUUCCGGAACUAGCGGCG-GCC
((.....(((((.....)))))((((((....--................))))------))((((((((((((..((((....))))(((....)))....))))).))))))).-)). ( -41.95)
>DroAna_CAF1 9387 120 - 1
GCAAGAGCGGACUAAAUGCGCGACACACUUUUUGCUCAAUAUUUAGUGUUGUGUGCCAUUGCGCCGUUAUUUUGAAGGUCAAGUGACCAGGGGAACCUUCUCCGGAACUGCCUCCCUCCU
....(((.(((......(((((((((((....((((........))))..)))))...)))))).(((........((((....)))).(((((....)))))..)))....)))))).. ( -32.70)
>consensus
GCAUGAGCGCGCAAAAUGCGCGGCACACUUUU__CUCAAUAUUUCGCGUUGUGUGCCAUUGCGCCGUUAUUUUGAAGGUCAAGUGACCAGGGGAACCUUUUCCGGAACUAGCGGCG_CCC
((....(((((.....)))))(((((((......................)))))))...))((((((((((((..((((....))))(((....)))....))))).)))))))..... (-34.33 = -35.81 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:57 2006