Locus 965

Sequence ID 2R_DroMel_CAF1
Location 4,110,336 – 4,110,452
Length 116
Max. P 0.789587
window1719

overview

Window 9

Location 4,110,336 – 4,110,452
Length 116
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 73.11
Mean single sequence MFE -32.18
Consensus MFE -19.81
Energy contribution -19.70
Covariance contribution -0.11
Combinations/Pair 1.38
Mean z-score -1.43
Structure conservation index 0.62
SVM decision value 0.58
SVM RNA-class probability 0.789587
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4110336 116 - 20766785
CUUCAUCGUGGGUGACAGUCCAAAGGAUCGAUUCGGCAUGAUCUGCAAGGCGUGCCACGCCCACAACGGUGGGUUAUGAUUACUAAAGGAGAACUUCUAUAAGUAGACAUAGAAAC
.(((((((((((((.(.((((...)))).)....((((((.((.....)))))))).)))))))...))))))(((((.(((((..((((....))))...))))).))))).... ( -35.10)
>DroGri_CAF1 13796 88 - 1
CUUUAUUGUGGGCGACAGUCCACAGAAUCGCUUUGGCAUGAUAUGCAAGGAGUGCCACAGGCAUAAUGGUAAAAAU------CAGUGCAAUUAC----------------------
.....((((((((....)))))))).....((.((((((..(......)..)))))).))((((..((((....))------))))))......---------------------- ( -25.00)
>DroSec_CAF1 14465 116 - 1
CUUCAUCGUGGGUGACAGUCCAAAGGAUCGAUUCGGCAUGAUCUGCAAGGCGUGCCACGCCCACAACGGUGUGUUAUGAUUACUAAGGGAGAACUUCUAUAAUUAGUCAUAGAAAC
...(((((((((((.(.((((...)))).)....((((((.((.....)))))))).)))))))...))))..(((((((((.((.((((....)))).))..))))))))).... ( -33.80)
>DroEre_CAF1 875 116 - 1
CUUCAUCGUGGGUGACAGUCCAAAGGAUCGAUUCGGCAUGAUCUGCAAGGCGUGCCACGCCCACAACGGUGGGUUAUGAUUGCUAAAGGAUAACUUCUGGAAUUAGGCACAGAAAC
..((((.....))))..(((....((((((........))))))....)))(((((..((((((....))))))..(((((.(..(((.....)))..).))))))))))...... ( -34.20)
>DroYak_CAF1 7258 116 - 1
CUUCAUCGUGGGUGACAGUCCAAAGGAUCGAUUCGGCAUGAUCUGCAAGGCGUGCCACGCCCACAACGGUGGGUUAUGACUGCUAAAGGAGAACUUCUAUAAUUAGGCACAGAAAC
((((...(((((((.(.((((...)))).)....((((((.((.....)))))))).)))))))...((..(.......)..))...))))....((((....))))......... ( -33.00)
>DroAna_CAF1 6554 95 - 1
CUUCAUUGUGGGCGAUACGCCACAGAAUCGCUUCGGCAUGAUCUGCAAGGCGUGCCACGCUCACAACGGUAAC-----AAAGCUACAGAAUUCUUUUUGU----------------
..((.(((((((((.((((((.((((.((((....))..))))))...))))))...))))))))).))....-----......((((((....))))))---------------- ( -32.00)
>consensus
CUUCAUCGUGGGUGACAGUCCAAAGGAUCGAUUCGGCAUGAUCUGCAAGGCGUGCCACGCCCACAACGGUGGGUUAUGAUUGCUAAAGGAGAACUUCUAUAAUUAG_CA_AGAAAC
.(((((((((((((..........(((....)))((((((.((.....)))))))).)))))))...))))))........................................... (-19.81 = -19.70 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:55 2006