Locus 963

Sequence ID 2R_DroMel_CAF1
Location 4,108,922 – 4,109,028
Length 106
Max. P 0.548945
window1716

overview

Window 6

Location 4,108,922 – 4,109,028
Length 106
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 95.71
Mean single sequence MFE -32.33
Consensus MFE -32.73
Energy contribution -33.07
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.28
Structure conservation index 1.01
SVM decision value 0.03
SVM RNA-class probability 0.548945
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4108922 106 - 20766785
UUCAAUUUCGCUGGCUUUUAUUUAGCUUUAUUCUGUUUUUCCGGGCCAUUGAUCAAGGCUAACGAGAUCGAUCGGCUGGC----UGGCUGGCCUGGCCGCCUGGCAAUCU
.........((((((........(((........)))......(((((((((((..(.....)..))))))..(((..(.----...)..))))))))))).)))..... ( -32.10)
>DroSim_CAF1 16739 106 - 1
UUCAAUUUCGCUGGCUUUUAUUUAGCUUUAUUCUGUUUUUCCGGGCCAUUGAUCAAGGCUAACGAGAUCGAUCGGCUGGC----UGGCUGGCCUGGCCGCCUGGCAAUCU
.........((((((........(((........)))......(((((((((((..(.....)..))))))..(((..(.----...)..))))))))))).)))..... ( -32.10)
>DroYak_CAF1 5918 110 - 1
UUCAAUUUCGCUGGCUUUUAUUUAGCUUUAUUCUGUUUUUCCGGGCCAUUGAUCAAGGCUAACGAGAUCGAUCGGCUGGCUGGCCUGCUUGCCUGGCCGCCUGGCAAUCU
.........((((((............................(((((((((((..(.....)..))))))).))))(((((((......))).))))))).)))..... ( -32.80)
>consensus
UUCAAUUUCGCUGGCUUUUAUUUAGCUUUAUUCUGUUUUUCCGGGCCAUUGAUCAAGGCUAACGAGAUCGAUCGGCUGGC____UGGCUGGCCUGGCCGCCUGGCAAUCU
.........((((((........(((........)))......(((((((((((..(.....)..))))))..(((((((......))))))))))))))).)))..... (-32.73 = -33.07 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:52 2006