Locus 961

Sequence ID 2R_DroMel_CAF1
Location 4,106,607 – 4,106,699
Length 92
Max. P 0.749740
window1714

overview

Window 4

Location 4,106,607 – 4,106,699
Length 92
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 90.73
Mean single sequence MFE -33.10
Consensus MFE -24.08
Energy contribution -24.58
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.28
Structure conservation index 0.73
SVM decision value 0.47
SVM RNA-class probability 0.749740
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4106607 92 + 20766785
AACUUUUUCAGACGCUAUCCUUGUG---GGCAGAAACUUGGCUCAAAGGGCACUUACCAGCUUGCAGAACAUGUUGGCUGAGGUGAGUGGGUGGU
............((((.(((((.((---(((.........))))))))))((((((((((((.(((.....))).))))..)))))))))))).. ( -31.50)
>DroSec_CAF1 10720 92 + 1
AACUUUUUCAGACGCUAUCCUUGUG---GGCAGAGACGCGGCUCAAAGGGCACUUACCAGCUUGCAGAACAUGUUGGCUGAGGUGAGUGGGUGGU
............((((.(((((.((---(((.(.....).))))))))))((((((((((((.(((.....))).))))..)))))))))))).. ( -31.80)
>DroSim_CAF1 14489 92 + 1
AACUUUUUCAGACGCUAUCCUUGUG---GGCAGAAACUCGGCUCAAAGGGCACUUACCAGCUUGCAGAACAUGUUGGCUGAGGUGAGUGGGUGGU
............((((.(((((.((---(((.(.....).))))))))))((((((((((((.(((.....))).))))..)))))))))))).. ( -32.60)
>DroYak_CAF1 3730 93 + 1
AACUUGUUCAUAUGCUAUCCUUGAGUGGAGGAGAGACUCGGCUCAAUGGG--CUUACCAGCUUGCAGAACAUGUUGGCUAUGGUGAGUGGGUGGU
.............(((((((((((((.(((......))).))))))...(--((((((((((.(((.....))).)))..))))))))))))))) ( -36.50)
>consensus
AACUUUUUCAGACGCUAUCCUUGUG___GGCAGAAACUCGGCUCAAAGGGCACUUACCAGCUUGCAGAACAUGUUGGCUGAGGUGAGUGGGUGGU
.............(((((((....................(((.....)))(((((((((((.(((.....))).))))..)))))))))))))) (-24.08 = -24.58 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:50 2006