Locus 956

Sequence ID 2R_DroMel_CAF1
Location 4,099,513 – 4,099,613
Length 100
Max. P 0.555215
window1704

overview

Window 4

Location 4,099,513 – 4,099,613
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 91.72
Mean single sequence MFE -23.44
Consensus MFE -21.93
Energy contribution -22.26
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.94
SVM decision value 0.04
SVM RNA-class probability 0.555215
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4099513 100 + 20766785
CCAGCAGGAGGACCCAGCUGAUAACACGUACCAAAACCACUUAUCCGUGUUGGCUUAGUAGCACGCAUAUGCAAAUCCAUGGGAACAUGAUUUGAUAAAA
.((((.((.....)).)))).(((((((.................)))))))(((....))).....(((.((((((.(((....))))))))))))... ( -23.63)
>DroSec_CAF1 3615 90 + 1
CCAGCAGGAGGACCCAGCUGAUAACACGUACC----------AUCCGUGUUGGCUUAGUAGCACGCAAAUGCAAAUCCAUGGGAACAUGAUUUGAUAAAA
.((((.((.....)).)))).(((((((....----------...)))))))(((....))).........((((((.(((....)))))))))...... ( -24.50)
>DroSim_CAF1 3582 90 + 1
CCAGCAGGAGGACCCAGCUGAUAACACGUACC----------AUCCGUGUUGGCUUAGUAGCACGCAAAUGCAAAUCCAUGGGAACAAGAUUUGAUAAAA
.((((.((.....)).)))).(((((((....----------...)))))))(((....))).........((((((..((....)).))))))...... ( -22.20)
>consensus
CCAGCAGGAGGACCCAGCUGAUAACACGUACC__________AUCCGUGUUGGCUUAGUAGCACGCAAAUGCAAAUCCAUGGGAACAUGAUUUGAUAAAA
.((((.((.....)).)))).(((((((.................)))))))(((....))).........((((((.(((....)))))))))...... (-21.93 = -22.26 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:41 2006