Locus 955

Sequence ID 2R_DroMel_CAF1
Location 4,098,257 – 4,098,364
Length 107
Max. P 0.884275
window1703

overview

Window 3

Location 4,098,257 – 4,098,364
Length 107
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 96.26
Mean single sequence MFE -33.83
Consensus MFE -31.92
Energy contribution -32.03
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.14
Structure conservation index 0.94
SVM decision value 0.93
SVM RNA-class probability 0.884275
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4098257 107 - 20766785
AACUUGGCUUUUGGGCAAUCCCCAUUCUCUUAAUGACUCGCUCAGAGGCGUAACCUCUGCAGCGCCUUAGAAUUCCUCGGAGUUCCUGGUAUGCAAAUUAGCCGCCA
.....((((..(..(((......................(((((((((.....)))))).)))(((...((((((....))))))..))).)))..)..)))).... ( -34.50)
>DroSec_CAF1 2205 107 - 1
AACUUGGCUAUUGGGCAAUCCCCAUUCUCUUAAUGACCCGUUUAGAGGCGUAACCUCUGCAGCGCCUUAGAAUUCCUCGGAGUUCCUGGUAUGCAAAUGAGCGGCCA
....((((...((((.....))))..............((((((((((.....))))((((..(((...((((((....))))))..))).))))..)))))))))) ( -34.40)
>DroSim_CAF1 2257 107 - 1
AACUUGGCUAUUGGGCAAUCCCCAUUCUCUUAAUGACCCGUUUAGAGGCGUAACCUCUGCAGCGCCUUAGAAUUCCUCGGAGUUCCUGGUAUGCAAAUGAGCCGCCA
.....((((..((((.....))))..............((((((((((.....)))))(((..(((...((((((....))))))..))).)))))))))))).... ( -32.60)
>consensus
AACUUGGCUAUUGGGCAAUCCCCAUUCUCUUAAUGACCCGUUUAGAGGCGUAACCUCUGCAGCGCCUUAGAAUUCCUCGGAGUUCCUGGUAUGCAAAUGAGCCGCCA
....((((...((((.....))))...............(((((((((.....))))((((..(((...((((((....))))))..))).))))..))))).)))) (-31.92 = -32.03 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:40 2006