Locus 952

Sequence ID 2R_DroMel_CAF1
Location 4,095,393 – 4,095,485
Length 92
Max. P 0.738723
window1700

overview

Window 0

Location 4,095,393 – 4,095,485
Length 92
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 77.76
Mean single sequence MFE -26.51
Consensus MFE -17.34
Energy contribution -18.40
Covariance contribution 1.06
Combinations/Pair 1.29
Mean z-score -1.44
Structure conservation index 0.65
SVM decision value 0.44
SVM RNA-class probability 0.738723
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4095393 92 - 20766785
AUCGUAAUAUCGAAAAGCGCCGCUGGGGUUAU-----------------AAACUAAUC--GGACCCCAUGAUCGCGAUCAGCGAUAAUUCGCUUGGGCAGCGAUUAAAACG
.(((......)))..........(((((((..-----------------.........--.)))))))(((((((..(((((((....)))).)))...)))))))..... ( -28.10)
>DroSec_CAF1 8201 92 - 1
AUCGUAAUAUCGGAAAGCGCCGCUGGGGUUAU-----------------AAACUAAUC--GGACCCCAUGAUCGCGAUCAGCGAUAAUUCGCUUGGGCAGCGAUUAAUACG
..((((....(((......))).(((((((..-----------------.........--.)))))))(((((((..(((((((....)))).)))...))))))).)))) ( -30.30)
>DroSim_CAF1 10331 92 - 1
AUCGUAAUAUCGAAAAGCGCCGCUGGGGUUAU-----------------AAACUAAUC--GGACCCCAUGAUCGCGAUCAGCGAUAAUUCGCUUGGGCAGCGAUUAAUACG
..((((.................(((((((..-----------------.........--.)))))))(((((((..(((((((....)))).)))...))))))).)))) ( -28.60)
>DroEre_CAF1 8230 94 - 1
AUCGUAAUAUCGGAAAGCGCCGCUGGGGUCAU-----------------AAACUAAUCGCGGGCCCCAUGAUCGCGAUCAGCGAUAACUCGCUUGGGCAGCGACUAAUACG
..((((....(((......))).(((((((..-----------------............)))))))...((((..(((((((....)))).)))...))))....)))) ( -26.94)
>DroYak_CAF1 8307 92 - 1
AUCGUAAUAUCGAAAAGCGCCGCUGGGGUCAU-----------------CAACUAAUC--GGGCCCCAUGAUCUCGAUCAGCGAUAAUUCGCUUGGCCAGCGCCUAAUCCG
.(((......)))...((((.(((((((((..-----------------.........--.)))))).((((....))))((((....))))..)))..))))........ ( -27.60)
>DroAna_CAF1 7502 107 - 1
AACG-GAUAUUGGACAUAUCCGAUCAGAU-AUAUAUCAUUCCCUUCAAAAAAAAAAUA--AAAAGAAAUGAUUGCGAUUAGCGAUAAUAAUUUCGGGCGGCGAUUAAAGUA
..((-(((((.....)))))))(((.(((-....)))...(((((......)).....--....(((((.(((((.....)))))....))))))))....)))....... ( -17.50)
>consensus
AUCGUAAUAUCGAAAAGCGCCGCUGGGGUUAU_________________AAACUAAUC__GGACCCCAUGAUCGCGAUCAGCGAUAAUUCGCUUGGGCAGCGAUUAAUACG
.(((......)))..........(((((((...............................)))))))(((((((..(((((((....))))).))...)))))))..... (-17.34 = -18.40 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:37 2006