Locus 95

Sequence ID 2R_DroMel_CAF1
Location 1,345,701 – 1,345,810
Length 109
Max. P 0.744252
window198

overview

Window 8

Location 1,345,701 – 1,345,810
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.90
Mean single sequence MFE -24.02
Consensus MFE -18.88
Energy contribution -18.92
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -1.74
Structure conservation index 0.79
SVM decision value 0.46
SVM RNA-class probability 0.744252
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1345701 109 + 20766785
AUUUGCUAGCAGUAU-----AUAUUGCUUGCCACCGAUUUGGCCUCAAUAUUUUGUGCCAAUUCCGCUCCCCUCC------AUCCAUUCAACGUUCUGAUCGGUUUUCGCAAUACGUACA
...........(((.-----.((((((.....(((((.(((((..(((....))).)))))..............------......(((......))))))))....))))))..))). ( -23.80)
>DroSec_CAF1 63986 114 + 1
AUUUGCUAGCAGUGUACUAUAUAUUGCUUGCCACCGAUUUGGCCUCAAUAUUUUGUGCCAAUUCUGCUCCCCUCC------UGCCAUUCAGCGUUCUGAUCGGUUUUCGCAAUACGUACA
..((((.(((((.((((...((((((...((((......))))..))))))...)))).....))))).......------.(((..((((....))))..)))....))))........ ( -27.80)
>DroSim_CAF1 42181 109 + 1
AUUUGCUAGCAGUGU-----AUAUUGCUUGCCACCGAUUUGGCCUCAAUAUUUUGUGCCAAUUCCGCUCCCCUCC------UGCCAUUCAGCGUUCUGAUCGGUUUUCGCAAUACGUACA
...........(((.-----.((((((.....(((((((((((..(((....))).))))....((((.......------........))))....)))))))....))))))..))). ( -26.66)
>DroEre_CAF1 45267 120 + 1
AUUUGCUUGCAGUAUGUCGUAUAUUGCUUGCCACCGAUUUGGCCCCAAUAUUUUGCGCACAUUCCGCUCCCCCCCUCGAUUCUCCAUUCUACAUUCUGAUCGGUUUUCGCAGUACGAACA
..((((..((.(.(((((((((((((...((((......))))..))))))...))).)))).).))..........((....((..((........))..))...))))))........ ( -22.10)
>DroYak_CAF1 32601 107 + 1
AUUUGCUUGCUGUAU-----AUAUUGCCUGCCAUCGAUUUGGCCUCAAUAUUUUGUGCCAAUUCCGUUCCCCC--------UUCCAUUCUACAUUCUGAUCGGUUUUCGCAAUACGCACA
.......(((.((((-----((((((...((((......))))..))))))....(((.((..(((.((....--------................)).)))..)).)))))))))).. ( -19.75)
>consensus
AUUUGCUAGCAGUAU_____AUAUUGCUUGCCACCGAUUUGGCCUCAAUAUUUUGUGCCAAUUCCGCUCCCCUCC______UUCCAUUCAACGUUCUGAUCGGUUUUCGCAAUACGUACA
..((((..(((((((.....))))))).....(((((.(((((..(((....))).)))))..........................((........)))))))....))))........ (-18.88 = -18.92 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:53 2006