Locus 949

Sequence ID 2R_DroMel_CAF1
Location 4,079,686 – 4,079,803
Length 117
Max. P 0.778254
window1697

overview

Window 7

Location 4,079,686 – 4,079,803
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 79.17
Mean single sequence MFE -39.13
Consensus MFE -24.69
Energy contribution -26.45
Covariance contribution 1.75
Combinations/Pair 1.13
Mean z-score -1.92
Structure conservation index 0.63
SVM decision value 0.55
SVM RNA-class probability 0.778254
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4079686 117 - 20766785
ACAAAGUUGCGGGAAUAUUUACGCGAAUGCGAUUAAAGGCCCAUUAAACGCUUUUCUUG--GGGCAGCACGCUGCUCCCAAGGAGGCGACACUGAAGUGGGUGGAU-CCCCAGCUUCCCC
...((((((.((((.......(((....))).......(((((((...((((((.((((--((((((....)))).)))))))))))).......)))))))...)-))))))))).... ( -47.20)
>DroSec_CAF1 61564 117 - 1
GCAAAGUUGCGGGAAUAUUUACGCGAAUGCGAUUAAAGGCCUAUUAAACGCUUUUCCAGAUGGGCAGCGUUCUGCUCCCAAGAAGGCCAUAUUGAAGUGGGAGGAUUCCCCAGCUUC---
...((((((.((((((.((..(((.....((((....(((((.....(((((..(((....))).)))))(((.......))))))))..))))..)))..)).)))))))))))).--- ( -37.40)
>DroSim_CAF1 69736 120 - 1
GCAAAGUUGCGGGAAUAUUUACGCGAAUGCGAUUAAAGGCCCAUUAAACGCUUUUCCAGAUGGGCAGCGUUCUGCUCCCAGGAAGGCGAGAUUGAAGUGGGUGGAUUCCCCAGCUUCCUC
...((((((.((((((.....(((....))).......(((((((...((((((((....((((.(((.....))))))))))))))).......)))))))..)))))))))))).... ( -42.50)
>DroYak_CAF1 65856 102 - 1
ACAAAGUUGCCGAAAAAUUUACGCGUAAGCGAUUGAAGGCCCAUUAAACGCUAUGCCACAUGGGCAGCGUGCU------------------UUCAAGUGGUUGGUUCCCCCAGCUUCCUC
...((((((..(((....((((((....))..((((((((.......(((((..(((.....)))))))))))------------------)))))))))....)))...)))))).... ( -29.41)
>consensus
ACAAAGUUGCGGGAAUAUUUACGCGAAUGCGAUUAAAGGCCCAUUAAACGCUUUUCCAGAUGGGCAGCGUGCUGCUCCCAAGAAGGCGA_AUUGAAGUGGGUGGAUUCCCCAGCUUCCUC
...((((((.((((((.....(((((((((........(((((((.............))))))).)))))).(((........))).........))).....)))))))))))).... (-24.69 = -26.45 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:34 2006