Locus 948

Sequence ID 2R_DroMel_CAF1
Location 4,079,448 – 4,079,566
Length 118
Max. P 0.786097
window1696

overview

Window 6

Location 4,079,448 – 4,079,566
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.93
Mean single sequence MFE -34.12
Consensus MFE -26.56
Energy contribution -25.80
Covariance contribution -0.76
Combinations/Pair 1.19
Mean z-score -1.92
Structure conservation index 0.78
SVM decision value 0.57
SVM RNA-class probability 0.786097
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4079448 118 + 20766785
UUAUUAUUUAAUUCCAGCUUUUGUUUUAUGGCUCGAGCUGCCUUUAACUGCGGCAUUACGAUUUUUAUGUCGAUUGGA--AGAUGGCGCAUUAGCGGCAUAAAACGGGCCGUGAGCAUUA
.....................(((((.((((((((...((((.((((.((((.((((.(((((........)))))..--.)))).)))))))).)))).....)))))))))))))... ( -35.10)
>DroSec_CAF1 61331 117 + 1
UUAUUAUUUAAUUCCAGCUUUUGU-UUAUGACUUGAGUCGCCUUUAACUGCGGCAUUCCGAUUUUUAUGUCGAUUGGA--AGAUGGCGCAUUAGCGGCAUAAAACGGGCCGUGAGCAUUA
.....................(((-(((((.((((.(((((........))))).((((((((........)))))))--).(((.(((....))).)))....)))).))))))))... ( -32.10)
>DroSim_CAF1 69502 118 + 1
UUAUUAUUUAAUUCCAGCUUUUGUUUUAUGACUCGAGUCGCCUUUAACUGCGGCAUUACGAUUUUUAUGUCGAUUGGA--AGAUGGCGCAUUAGCGGCAUAAAACGGGCCGUGAGCAUUA
................((((((((((((((((....)))(((.((((.((((.((((.(((((........)))))..--.)))).)))))))).)))))))))))).....)))).... ( -30.70)
>DroEre_CAF1 62542 117 + 1
UUAUUAUUUAAUUCCAGCUUCUGU-UUAUGGCUCGAGCUGCCUUUAACUGCGGCAUUACGAUUUUUAUGUCGAUUGGA--AGACGGCGCAUUAGCGGCAUAAAACGAGCCGUGAGCAUUA
.....................(((-((((((((((.(((((........)))))........(((((((((.......--.)))(.(((....))).))))))))))))))))))))... ( -38.40)
>DroYak_CAF1 65622 120 + 1
UUAUUAUUUAAUUCCAGCUUUUGUUUUAUGACUCGAGCUGCACUUAACUGCGGCAUUACGAUUUUUAUGUCGAUGGGAUCCGAUGGCGCAUUAGCGGCAUAAAACGGGCUGUGAGCAUUA
...........((((((((..(((((((((.((((.((((((......))))))....((((......)))).)))).........(((....))).)))))))))))))).)))..... ( -34.30)
>consensus
UUAUUAUUUAAUUCCAGCUUUUGUUUUAUGACUCGAGCUGCCUUUAACUGCGGCAUUACGAUUUUUAUGUCGAUUGGA__AGAUGGCGCAUUAGCGGCAUAAAACGGGCCGUGAGCAUUA
.....................(((.(((((.((((.(((((........)))))....((((......))))..........(((.(((....))).)))....)))).))))))))... (-26.56 = -25.80 +  -0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:33 2006