Locus 942

Sequence ID 2R_DroMel_CAF1
Location 4,073,960 – 4,074,066
Length 106
Max. P 0.634246
window1680

overview

Window 0

Location 4,073,960 – 4,074,066
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.78
Mean single sequence MFE -19.01
Consensus MFE -14.29
Energy contribution -14.01
Covariance contribution -0.28
Combinations/Pair 1.13
Mean z-score -1.66
Structure conservation index 0.75
SVM decision value 0.21
SVM RNA-class probability 0.634246
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4073960 106 + 20766785
AAUCUAAAAAUGCCUUUACCCUCAAUGC-UUUCCGCAUCGGCCAGCUAAUAUUUCC------CUAUAAUUUAUAUGGCCGCCCGGGGAAAACAUCCAGCAAACAACA-------UAAAUA
.........................(((-(..(((...((((((..(((.......------.......)))..))))))..)))(((.....))))))).......-------...... ( -19.14)
>DroSec_CAF1 56644 97 + 1
AAUCUAAAAAUGCCAU---------UGC-CUUUCGCAUCGGCCAGCUAAUAUUUCC------CUAUAAUUUAUAUGGCCGCCCGGGGAAAACAUCCAGCAAACAACA-------UAAAUA
...............(---------(((-...(((...((((((..(((.......------.......)))..))))))..)))(((.....))).))))......-------...... ( -16.34)
>DroSim_CAF1 64863 97 + 1
AAUCUAAAAAUGCCAU---------UGC-CUUUCGCAUCGGCCAGCUAAUAUUUCC------CUAUAAUUUAUAUGGCCGCCCGGGGAAAACAUCCAGCAAACAACA-------UAAAUA
...............(---------(((-...(((...((((((..(((.......------.......)))..))))))..)))(((.....))).))))......-------...... ( -16.34)
>DroEre_CAF1 58098 113 + 1
GAUCUAAAAAUGCCUUUGCAUUCAAUGUUUUUCCGCAUCGGCCAGCUAAUAUUCUAUAUAAUGUAUAAUGUAUAUGGUCGCCCGGGGAAAACAUCCAGCAAACAACA-------UAAAUA
.........(((..(((((.....((((((((((....((((((....((((..(((((...)))))..)))).))))))....))))))))))...)))))...))-------)..... ( -25.00)
>DroYak_CAF1 61000 114 + 1
AAUCUAAAAAUGCCUUUGCAUUCAAUGCUUUUCCGCAUCGGCCAGCUAAUAUUUUC------CUAUAAUUUAUAUGGUCGCCCAGGGAAAACAUCCAGCAAACAACAACAACAGCAAAUA
..............(((((.....(((.((((((....((((((..(((.......------.......)))..))))))....)))))).)))...))))).................. ( -18.24)
>consensus
AAUCUAAAAAUGCCUUU_C__UCAAUGC_UUUCCGCAUCGGCCAGCUAAUAUUUCC______CUAUAAUUUAUAUGGCCGCCCGGGGAAAACAUCCAGCAAACAACA_______UAAAUA
..........(((...................(((...((((((..............................))))))..)))(((.....))).))).................... (-14.29 = -14.01 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:17 2006