Locus 94

Sequence ID 2R_DroMel_CAF1
Location 1,345,476 – 1,345,596
Length 120
Max. P 0.999741
window197

overview

Window 7

Location 1,345,476 – 1,345,596
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.56
Mean single sequence MFE -38.70
Consensus MFE -33.08
Energy contribution -34.12
Covariance contribution 1.04
Combinations/Pair 1.03
Mean z-score -3.31
Structure conservation index 0.85
SVM decision value 3.98
SVM RNA-class probability 0.999741
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1345476 120 + 20766785
GGUCUGCCAAAUCCGCAACCCUCCCACCGGCCUAAAUAUUAGUUCAAUAGUCAUGACUGUCCAACUGAUGCUCCAAAUCCCCUGGGGUCAGCCCAAAAGCUGGCCCAGCCACGCACACAC
((..(((.......)))..)).......(((.....((((((((..(((((....)))))..))))))))..............((((((((......)))))))).))).......... ( -34.80)
>DroSec_CAF1 63748 120 + 1
GGUCUGCCAAAUCCGCAACCCUCCCACCGGCCUGGAUAUUAGUUCAAUAGUCAUGACUGUCCAACUGAUGCUCCAAAUCCCCUGGGGUCAGCCCGAGAGCUGGCCCAGCCACGCACACAC
((..(((.......)))..)).......(((.((((((((((((..(((((....)))))..)))))))).)))).........((((((((......)))))))).))).......... ( -40.30)
>DroSim_CAF1 41941 120 + 1
GGUCUGCCAAAUCCGCAACCCUCCCACCGGCCUGGAUAUUAGUUCAAUAGUCAUGACUGUCCAACUGAUGCUCCAAAUCCCCUGGGGUCAGCCCGAAAGCUGGCCCAGCCACGCACACAC
((..(((.......)))..)).......(((.((((((((((((..(((((....)))))..)))))))).)))).........((((((((......)))))))).))).......... ( -40.30)
>DroEre_CAF1 45043 116 + 1
G-UCUGCCAAAUCCGCAGCCCUCCCACCGGCCUGGAUAUUAGUUCAAUAGUCAUGACUGUCCAACUGAUGCCCCAAAUCCCCUGAGGUCAGCCCCAAUGCUGGCCAGGCCACACACG---
.-.((((.......))))..........(((((((.((((((((..(((((....)))))..)))))))).))............(((((((......)))))))))))).......--- ( -37.90)
>DroYak_CAF1 32376 117 + 1
GGUCUGCCAAAACCGCAACCCUCCCACCGGUUUGGAUAUUAGUUCAAUAGUCAUGACUGUCCAACUGAUGCUCCAAAUCCCCUGGGGUCAGCCCGAAAGCUGGCCAAGCCACACACA---
((..(((.......)))..))..(((..((((((((((((((((..(((((....)))))..)))))))).))))))))...)))(((((((......)))))))............--- ( -40.20)
>consensus
GGUCUGCCAAAUCCGCAACCCUCCCACCGGCCUGGAUAUUAGUUCAAUAGUCAUGACUGUCCAACUGAUGCUCCAAAUCCCCUGGGGUCAGCCCGAAAGCUGGCCCAGCCACGCACACAC
((..(((.......)))..)).......(((.((((((((((((..(((((....)))))..)))))))).)))).........((((((((......)))))))).))).......... (-33.08 = -34.12 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:52 2006