Locus 937

Sequence ID 2R_DroMel_CAF1
Location 4,070,793 – 4,070,898
Length 105
Max. P 0.967661
window1657

overview

Window 7

Location 4,070,793 – 4,070,898
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.62
Mean single sequence MFE -39.80
Consensus MFE -29.44
Energy contribution -31.00
Covariance contribution 1.56
Combinations/Pair 1.09
Mean z-score -2.74
Structure conservation index 0.74
SVM decision value 1.61
SVM RNA-class probability 0.967661
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4070793 105 - 20766785
AACUUAAGAGAGUCCCUCCUAUCGCUUAAGAGAUGUAACCGUAGGUGGAAAGUA---------------GCACGUGUUGCACGGCUUUCGCUUUCAUCUGCGCAGCAUCUCUGUUAAAAU
....((((.((..........)).))))((((((((...((((((((.((((((---------------((.((((...)))))))...)))))))))))))..))))))))........ ( -33.90)
>DroSec_CAF1 53456 120 - 1
GACUUAAGAGAGCCCCUGCCUUCGCUUAAGAGAUGAAACCGUAGGCGGAAAGUAACUCCUGGCAACGCAGCACGUGUUGCACGGCUUUCGCUUUCAUCUGCGCAGCAUCUCUGUUAAAAU
...((((.((((...(((((((.....)))((((((((.((.(((((((.......)))..(((((((.....)))))))...)))).)).))))))))..))))...)))).))))... ( -39.20)
>DroSim_CAF1 61635 120 - 1
GACUUAAGAGAGUCCCUGCCUUCGCUUAAGAGAUGAAACCGUAGGCGGAAAGUAACUCCUGGCAACGCAGCACGUGUUGCACGGCUUUCGCUUUCAUCUGCGCAGCAUCUCUGUUAAAAU
...((((.((((...(((((((.....)))((((((((.((.(((((((.......)))..(((((((.....)))))))...)))).)).))))))))..))))...)))).))))... ( -39.90)
>DroEre_CAF1 54812 115 - 1
GACUUAAGAGAGCCCC-----UCGCUCAAGAGAUGUAACCGCAGGUUGAAAGUAACUCCUGGCAACGCAGCACGUGUUGCACGGCUUUCGCUUUCAUCUGCGCAGCAUCUCUGCUAAAAU
.........((((...-----..)))).((((((((...(((((((.((((((.....((((((((((.....))))))).))).....)))))))))))))..))))))))........ ( -45.50)
>DroYak_CAF1 57419 115 - 1
GACUUAAGAGAGUUCC-----UCGCUUAAGAGAUGAAACCGCAGGCUGUAAGUAACUCCUGGCAACGCAGCACGUGUUGCACGGCUUUCGCUUUCAUCUGCGCAGCAUCUCUGCUAAAAU
..((((((.(((...)-----)).))))))((((((((.((.(((((((.((......)).(((((((.....)))))))))))))).)).))))))))..((((.....))))...... ( -40.50)
>consensus
GACUUAAGAGAGUCCCU_C__UCGCUUAAGAGAUGAAACCGUAGGCGGAAAGUAACUCCUGGCAACGCAGCACGUGUUGCACGGCUUUCGCUUUCAUCUGCGCAGCAUCUCUGUUAAAAU
.........((((..........)))).(((((((....(((((...((((((.....((((((((((.....))))))).))).....))))))..)))))...)))))))........ (-29.44 = -31.00 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:55 2006