Locus 93

Sequence ID 2R_DroMel_CAF1
Location 1,345,226 – 1,345,338
Length 112
Max. P 0.927885
window196

overview

Window 6

Location 1,345,226 – 1,345,338
Length 112
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 78.23
Mean single sequence MFE -21.64
Consensus MFE -18.60
Energy contribution -18.23
Covariance contribution -0.38
Combinations/Pair 1.11
Mean z-score -1.72
Structure conservation index 0.86
SVM decision value 1.19
SVM RNA-class probability 0.927885
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1345226 112 - 20766785
AUCUGCAUCAGCCAGAAUGCGGGCUAAUUGGCUGUCCUCAAAGGGCGGGCAUUUCCCUUUCUACAUUUCGCCCUUUCUCCCAUUCUUCCAUUCUCGCUUUCUCCUCUUCAGC
.........(((.((((((.((((.........))))..((((((((((.................))))))))))............)))))).))).............. ( -24.73)
>DroSec_CAF1 63527 104 - 1
AUCUGCAUCAUCCAGAAUGCGGGCUAAUUGGCUGUCCUCAAAGGGCGGGCCUUUCCCAU--------UCUCCCAUUCUCCUUUUCUCCCAUUCUCGCUUUCUCCUCUUCAGC
..(((........((((.(((((.....(((..((((.....))))(((.....)))..--------....................)))..))))).))))......))). ( -20.24)
>DroSim_CAF1 41712 112 - 1
AUCUGCAUCAUCCAGAAUGCGGGCUAAUUGGCCGUCCUCAAAGGGCGGGCCUUUCCCUUUCUACGUUUCUCCCAUUCUCCCUUUCUCCCAUUCUCGCUUUCUCCUCUUUAGC
.............((((.(((((((....))))((((.....))))(((.....))).....................................))).)))).......... ( -20.20)
>DroEre_CAF1 44795 88 - 1
AUCUGCAUCACCCAGAAUGCGGGCUAAUUAGCUGUCCACAAAGGGCGGGCCUUUCCCCUUC------------------------CCGCUUCAUCGCUUUCUCCUGCUCACC
..............(((.(((((..........((((.....))))(((......)))..)------------------------)))))))...((........))..... ( -21.40)
>consensus
AUCUGCAUCAUCCAGAAUGCGGGCUAAUUGGCUGUCCUCAAAGGGCGGGCCUUUCCCUUUC______UCUCCCAUUCUCCCUUUCUCCCAUUCUCGCUUUCUCCUCUUCAGC
.............((((.(((((((....))))((((.....))))(((.....))).....................................))).)))).......... (-18.60 = -18.23 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:48 2006