Locus 928

Sequence ID 2R_DroMel_CAF1
Location 4,066,465 – 4,066,585
Length 120
Max. P 0.548362
window1639

overview

Window 9

Location 4,066,465 – 4,066,585
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.50
Mean single sequence MFE -15.56
Consensus MFE -12.26
Energy contribution -12.50
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.44
Structure conservation index 0.79
SVM decision value 0.03
SVM RNA-class probability 0.548362
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4066465 120 + 20766785
CAUUAUCUUCAUCGAGCAUAAACAGACGGCACAUUUAAUUAAUUUUGUAAAUUAAAACAAAAUAUUCAAUUUGCACCGAAUGCAAAUCGAAACAAUUAAACUACAUUGCAUAAUAAUCUC
..(((((((....))).)))).......(((..(((((((.(((((((........))))))).(((.(((((((.....))))))).)))..)))))))......)))........... ( -15.10)
>DroSec_CAF1 49010 120 + 1
UAUUAUCUUCAUCGCGCAUAAACAGACGACACAUUUAAUUAAUUUUGUAAAUUAAAACAAAAUAUUCAAUUUGCACCGAAUGCAAAUCGAAACAAUUACACUUCAUUGCAUUAUAAUCUC
...............(((.......................(((((((........))))))).(((.(((((((.....))))))).)))...............)))........... ( -14.50)
>DroSim_CAF1 57249 120 + 1
UAUUAUCUUCAUCGCGCAUAAACAGACGGCACAUUUAAUUAAUUUUGUAAAUUAAAACAAAAUAUUCAAUUUGCACCGAAUGCAAAUCGAAACAAUUAAACUACAUUGCAUUAUAAUCUC
.............((((...........))...(((((((.(((((((........))))))).(((.(((((((.....))))))).)))..))))))).......))........... ( -16.20)
>DroEre_CAF1 50332 119 + 1
GAUUAUCUUCAUCGCGCAUAAACAGACGGCACAUUUAAUUAAUUUUGUAAAUUAAAACCAAAUAUUCAAUUUGCUCCGAAUGCAAAUCGA-ACAAUUACACUACAUUGCAUUAUAAUAUC
...............(((.........((....(((((((.........))))))).)).....(((.((((((.......)))))).))-)..............)))........... ( -11.60)
>DroYak_CAF1 53116 114 + 1
UAUUA------UCGCGCAUAAACAGAUGGCACGUUUAAUUAAUUUUGUAAAUUAAAACAAAAUAUUUCAUUUGCUUUGAAUGCAAAUCGAAACAAUUAAACUACACUGCAUUAUAAUGUC
(((((------(.((.(((......)))))..((((((((.(((((((........))))))).((((((((((.......)))))).)))).))))))))...........)))))).. ( -20.40)
>consensus
UAUUAUCUUCAUCGCGCAUAAACAGACGGCACAUUUAAUUAAUUUUGUAAAUUAAAACAAAAUAUUCAAUUUGCACCGAAUGCAAAUCGAAACAAUUAAACUACAUUGCAUUAUAAUCUC
...............(((.......................(((((((........))))))).(((.((((((.......)))))).)))...............)))........... (-12.26 = -12.50 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:38 2006