Locus 926

Sequence ID 2R_DroMel_CAF1
Location 4,065,845 – 4,065,965
Length 120
Max. P 0.890922
window1637

overview

Window 7

Location 4,065,845 – 4,065,965
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.88
Mean single sequence MFE -33.40
Consensus MFE -27.23
Energy contribution -27.48
Covariance contribution 0.25
Combinations/Pair 1.04
Mean z-score -2.18
Structure conservation index 0.82
SVM decision value 0.96
SVM RNA-class probability 0.890922
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4065845 120 + 20766785
ACUUCCGAAAAAGGGAAACACUGUUUCGGCCAACUUCUACUUGACAAGACAACAGCCGAAAGCUGAGCAAGCAAAGCUGCGCAUUGUGUCACUUUUGUUUGCCGUUUCCAUCUUCAAUUC
......(((....((((((....(((((((.....(((........))).....)))))))...(.((((((((((.(((((...))).)).)))))))))))))))))...)))..... ( -33.50)
>DroSec_CAF1 48427 118 + 1
ACUACCGAAAAAGGGCAAUACUGUU--GGCCAACAUCAACUUGACAAGACAACAGUCGAAAGCUGAGCAAGCAAAGCUGCGCAUUGUGUCAGUUUUGUUUGCCGUUUCCAUCUUCAAUUC
......(((...((.((((...)))--).))...............((((..(((.(....)))).((((((((((((((((...))).))))))))))))).)))).....)))..... ( -32.50)
>DroSim_CAF1 56014 118 + 1
GCUACCGAAAAAGGGCAAUACUGUU--GGCUAACUUCAACUUGACAAGACAACAGCCGAAAGCUGAGCAAGCAAAGCUGCGCAUUGUGUCAGUUUUGUUUGCCGUUUCCAUCUUCAAUUC
((..((......))))......(((--((......)))))((((..(((...(((.(....)))).((((((((((((((((...))).)))))))))))))........)))))))... ( -31.60)
>DroEre_CAF1 49742 118 + 1
ACUACGGAAAAAGGGCAACACUGUU--GACCCAAUUCAACUUGGCAAGACAACAGCCGAAAGCUGAGCAAGCAAAGCUGCGCAUUGUGUCAGUCUUGUUUGCUGUUUCCAUCUUCAAUUU
.....(((((..(((((((...)))--).)))....................(((.(....))))(((((((((..((((((...))).)))..))))))))).)))))........... ( -36.00)
>consensus
ACUACCGAAAAAGGGCAACACUGUU__GGCCAACUUCAACUUGACAAGACAACAGCCGAAAGCUGAGCAAGCAAAGCUGCGCAUUGUGUCAGUUUUGUUUGCCGUUUCCAUCUUCAAUUC
......(((....((.(((.................................(((.(....)))).((((((((((((((((...))).))))))))))))).))).))...)))..... (-27.23 = -27.48 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:36 2006