Locus 922

Sequence ID 2R_DroMel_CAF1
Location 4,063,394 – 4,063,513
Length 119
Max. P 0.998997
window1627

overview

Window 7

Location 4,063,394 – 4,063,513
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.15
Mean single sequence MFE -18.43
Consensus MFE -17.56
Energy contribution -17.08
Covariance contribution -0.48
Combinations/Pair 1.13
Mean z-score -2.14
Structure conservation index 0.95
SVM decision value 3.32
SVM RNA-class probability 0.998997
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4063394 119 + 20766785
GGCAAAGUUAUUUACCGUAAAAAUAUAACUUUUUCUUGCAGCUAUUUUUCUUUUCCUUUGUCCUUUUUCUCAAGUGGUUGUUUGUUUAUGGAAUUUUCAUUUGUCUCUUU-UUUCACUUC
((((((........(((((((...((((((....((((.((........(.........)........)))))).))))))...)))))))........)))))).....-......... ( -18.18)
>DroSec_CAF1 46177 119 + 1
GGCAAAGUUAUUUACCGUAAAAAUAUAACUUUUUCUUGCAGCUAUUUUCCUUUUCCUUUGUCCUUUUUCUCAAGUGGUUGUUUGUUUAUGGAAUUUUCAUUUGUCUCUUU-UUUCACUUC
((((((........(((((((...((((((....((((.((...........................)))))).))))))...)))))))........)))))).....-......... ( -17.82)
>DroSim_CAF1 52751 120 + 1
GGCAAAGUUAUUUACCGUAAAAAUAUAACUUUUUCUUGCAGCUAUUUUCCUUUUCCUUUGUCCUUUUUCUCAAGUGGUUGUUUGUUUAUGGAAUUUUCAUUUGUCUCUUUUUUUCACUUC
((((((........(((((((...((((((....((((.((...........................)))))).))))))...)))))))........))))))............... ( -17.82)
>DroEre_CAF1 47337 119 + 1
GGCGAAGUUAUUUACCGUAAAAAUAUAACUUUUUCUUGCAGCUAUUUUUCUUUUCCUUUGUCCUUUUUCUGAAGUGGCUGUUUGUUUAUGGAAUUUUCAUUUGUCUCCUU-UUUCGCUUC
((((((........(((((((................(((((((((((......................)))))))))))...)))))))........)))))).....-......... ( -20.45)
>DroYak_CAF1 50126 119 + 1
GGCAAAGUUAUUUACCGUAAAAAUAUAACUUUUUCUUGCAGCUAUUUUUCUUUUCCUUUGUCCUUUUUCUCAAGUGGUUGCUUGUUUAUGGAAUUUUCAUUUGUCUCUUU-UUUCACUUC
((((((........(((((((................((((((((((........................))))))))))...)))))))........)))))).....-......... ( -17.86)
>consensus
GGCAAAGUUAUUUACCGUAAAAAUAUAACUUUUUCUUGCAGCUAUUUUUCUUUUCCUUUGUCCUUUUUCUCAAGUGGUUGUUUGUUUAUGGAAUUUUCAUUUGUCUCUUU_UUUCACUUC
((((((........(((((((................((((((((((........................))))))))))...)))))))........))))))............... (-17.56 = -17.08 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:26 2006