| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,343,226 – 1,343,379 |
| Length | 153 |
| Max. P | 0.987137 |
| Location | 1,343,226 – 1,343,340 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.90 |
| Mean single sequence MFE | -30.07 |
| Consensus MFE | -19.54 |
| Energy contribution | -20.97 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.865362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1343226 114 + 20766785 UUUACGGAAAGCCGUAUUUACGGAAUGCAAAUAACUAAUGCAUACAUAUUCCGCACACAUCUGCCUAAUGUGGGGCAAUUAUGGUUAAAAGAUCAUAAAAAGAGGUGGAAGUGC------ .....((((..((((....)))).(((((.........))))).....))))((((.(((((((((......))))..((((((((....))))))))....)))))...))))------ ( -32.10) >DroSec_CAF1 61586 114 + 1 UUUACGGAAAGCCGUAUUUACGGGAAGCAAAUAACUAAUGCAUACAUAUUCCGCACACAUCUGCCUAAUGUGGGGCAAUUAUGGUUAAAAGAUCAUAAAAAGAGGUGGAAGUGC------ .....((((..((((....))))...(((.........))).......))))((((.(((((((((......))))..((((((((....))))))))....)))))...))))------ ( -30.50) >DroSim_CAF1 39707 114 + 1 UUUACGGAAAGCCGUAUUUACGGGAAGCAAAUAACUAAUGCAUACAUAUUCCGCACACAUCUGCCUAAUGUGGGGCAAUUAUGGUUAAAAGAUCAUAAAAAGAGGUGGAAGUGC------ .....((((..((((....))))...(((.........))).......))))((((.(((((((((......))))..((((((((....))))))))....)))))...))))------ ( -30.50) >DroEre_CAF1 42863 104 + 1 UUUGC----------------GGGAAGCAAAUAACUAAUGCAUACACAUGCCGCACACAUCUGCAUAAUGUGGGGCAAUUAUGGUUAAAAGAUCAUAAAAAGCGGGGGAGCAGCAGAAGU (((((----------------.....)))))..(((..(((.......((((.((((...........)))).)))).((((((((....))))))))...((......)).)))..))) ( -27.20) >consensus UUUACGGAAAGCCGUAUUUACGGGAAGCAAAUAACUAAUGCAUACAUAUUCCGCACACAUCUGCCUAAUGUGGGGCAAUUAUGGUUAAAAGAUCAUAAAAAGAGGUGGAAGUGC______ ..(((((....)))))..........(((....(((..(((...((((((..(((......)))..))))))..))).((((((((....)))))))).....))).....)))...... (-19.54 = -20.97 + 1.44)
| Location | 1,343,266 – 1,343,379 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.86 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -23.41 |
| Energy contribution | -25.85 |
| Covariance contribution | 2.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.78 |
| SVM decision value | 2.07 |
| SVM RNA-class probability | 0.987137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1343266 113 + 20766785 CAUACAUAUUCCGCACACAUCUGCCUAAUGUGGGGCAAUUAUGGUUAAAAGAUCAUAAAAAGAGGUGGAAGUGC-------CAGAAAUACAGAAAACCCAUUUCCAUAUCAACUCGCCCC ....((((((..(((......)))..))))))((((..((((((((....))))))))...((.(((((((((.-------.................))))))))).)).....)))). ( -30.37) >DroSec_CAF1 61626 113 + 1 CAUACAUAUUCCGCACACAUCUGCCUAAUGUGGGGCAAUUAUGGUUAAAAGAUCAUAAAAAGAGGUGGAAGUGC-------CAGAAAUACAGAGAACCCAUAUCCAUUUCAACUCGCCCC ....((((((..(((......)))..))))))((((..((((((((....))))))))...((((((((.(((.-------.................))).)))))))).....)))). ( -29.97) >DroSim_CAF1 39747 113 + 1 CAUACAUAUUCCGCACACAUCUGCCUAAUGUGGGGCAAUUAUGGUUAAAAGAUCAUAAAAAGAGGUGGAAGUGC-------CAGAAAUACAGAGAACCCAUAUCCAUUUCAACUCGCCCC ....((((((..(((......)))..))))))((((..((((((((....))))))))...((((((((.(((.-------.................))).)))))))).....)))). ( -29.97) >DroEre_CAF1 42887 120 + 1 CAUACACAUGCCGCACACAUCUGCAUAAUGUGGGGCAAUUAUGGUUAAAAGAUCAUAAAAAGCGGGGGAGCAGCAGAAGUACAGCAGUACGGAAAACCCAUUUCCAUUUCAACUCGCCCC ........((((.((((...........)))).)))).((((((((....)))))))).....(((((((........((((....))))(((((.....))))).......))).)))) ( -34.30) >DroYak_CAF1 30228 113 + 1 CAUACAUAUUCUGUACACAUCUGCAUAAUGUGGGGCAAUUAUGGUUAAAAUAGAGUAAAAAGCGGCGGAAGAGC-------CAGAAAUACAGAAAAACGAUUUCCAUUUCAACUCGCCCC ....((((((.((((......)))).))))))((((...(((.......)))((((.......(((......))-------).(((((...((((.....)))).))))).)))))))). ( -26.30) >consensus CAUACAUAUUCCGCACACAUCUGCCUAAUGUGGGGCAAUUAUGGUUAAAAGAUCAUAAAAAGAGGUGGAAGUGC_______CAGAAAUACAGAAAACCCAUUUCCAUUUCAACUCGCCCC ....((((((..(((......)))..))))))((((..((((((((....))))))))...((((((((((((.........................)))))))))))).....)))). (-23.41 = -25.85 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:44 2006