Locus 918

Sequence ID 2R_DroMel_CAF1
Location 4,060,898 – 4,061,015
Length 117
Max. P 0.902220
window1621

overview

Window 1

Location 4,060,898 – 4,061,015
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.69
Mean single sequence MFE -22.17
Consensus MFE -20.66
Energy contribution -20.62
Covariance contribution -0.04
Combinations/Pair 1.12
Mean z-score -1.42
Structure conservation index 0.93
SVM decision value 1.02
SVM RNA-class probability 0.902220
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4060898 117 + 20766785
CACAAGCAUUUCGUUCCC---GACUAUGUGGGCGAUUUUCCUUUGCUUCGCCCAUAAGUUUAUUUAUGUUUAUUUUGUGGCUAAUGUAAUUUUUGGCAAAUAAUCAUCUAAUUUGUUUUC
((((((.....(((....---((((.(((((((((............))))))))))))).....))).....))))))(((((........)))))....................... ( -26.90)
>DroSec_CAF1 43618 113 + 1
CACAAGCAUUUCGUUCCCUAUGACUAUGUGGGCGAUUUUCCUCUGCUUCGCCCAUAAGUU-------GUUUAUUUUGUGGCUAAUGUAAUUUUUGGCAAAUAAUCAUCUAAUUUGUUUUC
(((((((.....)).....(..(((.(((((((((............)))))))))))).-------.).....)))))(((((........)))))....................... ( -24.80)
>DroSim_CAF1 50252 113 + 1
CACAAGCAUUUCGUUCCCUCUGACUAUGUGGGCGAUUUUCCUCUGCUUCGCCCAUAAGUU-------GUUUAUUUUGUGGCUAAUGUAAUUUUUGGCAAAUAAUCAUCUAAUUUGUUUUC
(((((((.....)).......((((.(((((((((............)))))))))))))-------.......)))))(((((........)))))....................... ( -24.20)
>DroEre_CAF1 44785 110 + 1
CACAAGCAUUUCAUUCCG---GACUAUGUGGGCAAUUUUCCUCAGCUUUAUCUAUAAGUU-------GUUUAUUUUGUGGCUAAUGUAAUUUUUGGCAAAUAAUCAUCUAAUUUGUUUUC
(((((((....(((....---....)))...)).........((((((.......)))))-------)......)))))(((((........)))))....................... ( -15.70)
>DroYak_CAF1 47490 110 + 1
CACAAGGAUUUCAUUUCG---GACUAUGUGGGCCAUUUUCCUCGGCUUUAUCCAUAAGUU-------GUUUAUUUUGUGGCUAAUGUAAUUUUUGGCAAAUAAUCAUCUAAUUUGUUUUC
..((((((((.((((...---..(.....)((((((......((((((.......)))))-------)........)))))))))).))))))))((((((.........)))))).... ( -19.24)
>consensus
CACAAGCAUUUCGUUCCC___GACUAUGUGGGCGAUUUUCCUCUGCUUCGCCCAUAAGUU_______GUUUAUUUUGUGGCUAAUGUAAUUUUUGGCAAAUAAUCAUCUAAUUUGUUUUC
((((((.((............((((.(((((((((............)))))))))))))...........))))))))(((((........)))))....................... (-20.66 = -20.62 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:20 2006