| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,059,662 – 4,059,782 |
| Length | 120 |
| Max. P | 0.728584 |
| Location | 4,059,662 – 4,059,782 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.00 |
| Mean single sequence MFE | -29.20 |
| Consensus MFE | -22.26 |
| Energy contribution | -22.38 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4059662 120 - 20766785 UUGACUGCCGUUGAGAGGAUUACAGUCGCAUAAAACGCACAAAUGGCAUUUGCAAUGGCAACAAAAUGUCAGUCAAACGUCAAGAGAGCUGUGAAAAUAGCAGAACAAAUAAAUGAGCUU ((((((((((((.....(((....)))((.......))...)))))))((((...(((((......)))))..)))).)))))....(((((....)))))................... ( -27.40) >DroSec_CAF1 42450 120 - 1 UUGACUGCCGUUGAGAGGAUUACAGUCGCAUAAAACGCACAAAUGGCAUUUGCAAUGGCAACAAAAUGUCAGUUAAACGUCAAGAGAGCUGUGAAAAUAGCAGAGCAAAUAAAUGAGCUU ((((((((((((.....(((....)))((.......))...))))))).......(((((......))))).......)))))....(((((....))))).((((..........)))) ( -27.30) >DroSim_CAF1 48644 120 - 1 UUGACUGCCGUUGAGAGGAUUACAGUCGCAUAAAACGCACAAAUGGCAUUUGCAAUGGCAACAAAAUGUCAGUCAAACGUCAAGAGAGCUGUGAAAAUAGCAGAGCAAAUAAAUGAGCUU ((((((((((((.....(((....)))((.......))...)))))))((((...(((((......)))))..)))).)))))....(((((....))))).((((..........)))) ( -29.00) >DroEre_CAF1 43702 120 - 1 UCGACUGCCGUUGAGAGGAUUACAGUGGCAUAAAACGCACAAAUGCCAUUUGCAAUCGCAACGAAAUGUCAGUCAAACGUCAAGAGAGCUGUGAAAAUAGUAGAACAAAUAAAUGAGCUU ..(((((((((((....((((.(((((((((...........)))))).))).)))).)))))....).))))).............(((((....)))))................... ( -26.50) >DroYak_CAF1 46420 120 - 1 UCGACCGCCGUUGAGAGGAUUACAGUCGCAUAAAAUGCACAAAUGGCGUUUGCAAUGGCAACAAAAUGUCAGUCAAACGUCGAAAACGCUGUGAAAAUAACACAGCAAAUAAAUGAGCUU (((((.((((((.....(((....)))((((...))))...))))))(((((...(((((......)))))..))))))))))....((((((.......)))))).............. ( -35.80) >consensus UUGACUGCCGUUGAGAGGAUUACAGUCGCAUAAAACGCACAAAUGGCAUUUGCAAUGGCAACAAAAUGUCAGUCAAACGUCAAGAGAGCUGUGAAAAUAGCAGAGCAAAUAAAUGAGCUU ((((((((((((.....(((....)))((.......))...)))))))((((...(((((......)))))..)))).)))))....(((((....)))))................... (-22.26 = -22.38 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:19 2006