| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,055,662 – 4,055,755 |
| Length | 93 |
| Max. P | 0.992482 |
| Location | 4,055,662 – 4,055,755 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 70.29 |
| Mean single sequence MFE | -31.47 |
| Consensus MFE | -20.55 |
| Energy contribution | -21.18 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.65 |
| SVM decision value | 2.33 |
| SVM RNA-class probability | 0.992482 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4055662 93 - 20766785 AGAAAUGUGAGAAGUGAAUGUAACGAGCGCUAGGUGGCGCUUGUGCGCAAUCUUAG------UUGCAUUGUUGCUAGCAUAGCUUCAUUUCCUUUUCCG-------------------- .((((((.(((..(((...(((((((((((((((..((((....))))...)))))------.))).)))))))...)))..)))))))))........-------------------- ( -34.40) >DroSec_CAF1 38323 99 - 1 AGAAGUGUGAGUAGUUAAUGUGAGCAACGCUAGGUGGCGCUUGUGCGCAAUCUUAG------UUGCAUUGUUGCUUGCAUAUUUUCAUUUCCUUUUCCGUUUCC-G------------- .((((((.(((((.....((..((((((((((((..((((....))))...)))))------)......))))))..))))))).)))))).............-.------------- ( -32.40) >DroSim_CAF1 44450 97 - 1 AGAAAGGUGAGUAGUUAAUGUGGGCA--GCUAGGUGGCGCUUGUGCGCAAUCUUAG------UUGCAUUGUUGCUUGCAUAUUUUCAUUUCCUUUUCCGUUUCC-G------------- .((((.(.(((.((..((((...(((--((((((..((((....))))...)))))------))))..(((.....)))......))))..)).)))).)))).-.------------- ( -30.90) >DroEre_CAF1 38912 116 - 1 AAAGUCGUGAGCAUUAAAUGUAACCGGCGCUAGGUGGCGCUUGCGUGCGAUCUCGGAGGCAGACGCAUUGCUGCUUAAAU--CUUUAUUCCCUUCGCCGAUUC-CCAUCUAAGUAGUAG ...((((...((((...))))...))))(((((((((.(....((.((((....((((((((........))))).....--......)))..))))))...)-)))))).)))..... ( -28.20) >consensus AGAAAUGUGAGUAGUUAAUGUAACCAGCGCUAGGUGGCGCUUGUGCGCAAUCUUAG______UUGCAUUGUUGCUUGCAUAUCUUCAUUUCCUUUUCCGUUUC__G_____________ .((((((((((((...(((((((......(((((..((((....))))...)))))......)))))))..)))))))))...)))................................. (-20.55 = -21.18 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:08 2006