Locus 903

Sequence ID 2R_DroMel_CAF1
Location 4,049,088 – 4,049,208
Length 120
Max. P 0.958060
window1585

overview

Window 5

Location 4,049,088 – 4,049,208
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.54
Mean single sequence MFE -26.12
Consensus MFE -23.04
Energy contribution -23.86
Covariance contribution 0.82
Combinations/Pair 1.03
Mean z-score -1.63
Structure conservation index 0.88
SVM decision value 1.48
SVM RNA-class probability 0.958060
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4049088 120 - 20766785
GAGUCAACUUAAAGUUGAUUAAAUUAGAAAUUUUAUGGCCUCAAAACAAAAUGUCAAAGUUUUUACAACUGCUGGUCUGGGGCGGCAGCCUUGAAAGUUGAUAAAUUGUGGCAGAAAGUA
.(((((((.....))))))).........(((((...(((.....((((..((((((..(((......((((((.(....).))))))....)))..))))))..)))))))..))))). ( -28.80)
>DroSec_CAF1 31854 120 - 1
GAGUCAACUUAAAGUUGAUUAAAUUAGAAAUUUUAUGGCCUCAAAACAAAAUGUCAAAGUUUUUACAACUGCUGGUCUGGAGCGGCAGCCUUGAAAGUUGAUAAAUUGUGGCAGAAAGUA
.(((((((.....))))))).........(((((...(((.....((((..((((((..(((......((((((.(....).))))))....)))..))))))..)))))))..))))). ( -28.30)
>DroSim_CAF1 36524 120 - 1
GAGUCAACUUAAAGUUGAUUAAAUUAGAAAUUUUAUGGCCUCAAAACAAAAUGUCAAAGUUUUUACAACUGCUGGUCUGGGGCGGCAGCCUUGAAAGUUGAUAAAUUGUGGCAGAAAGUA
.(((((((.....))))))).........(((((...(((.....((((..((((((..(((......((((((.(....).))))))....)))..))))))..)))))))..))))). ( -28.80)
>DroEre_CAF1 31042 112 - 1
GAGUCAACUUAAAGUUGAUUAAAUUAGAAAUUUUAUGGCCUCAAAACAAAAUGUCAAAGUUUUUACAACUGCUG--------CGGCAGCCUUGAAACUUGAUAAAUUGUAGCAGAAAGUU
.(((((((.....)))))))........((((((...((......((((..((((((.(((((.....((((..--------..))))....)))))))))))..)))).))..)))))) ( -22.70)
>DroYak_CAF1 34883 112 - 1
GAGUCAACUUAAAGUUGAUUAAAUUAGAAAUUUUAUAGCCUCAAAACAAAAUGUCAAAGUUUUUACAACGGCUG--------GGGCAGCCUUGAAAGUUGAUAAAUUGUUGCAGAAAGUA
.(((((((.....))))))).........(((((...((.....(((((..((((((...((((.(((.(((((--------...))))))))))))))))))..)))))))..))))). ( -22.00)
>consensus
GAGUCAACUUAAAGUUGAUUAAAUUAGAAAUUUUAUGGCCUCAAAACAAAAUGUCAAAGUUUUUACAACUGCUGGUCUGG_GCGGCAGCCUUGAAAGUUGAUAAAUUGUGGCAGAAAGUA
.(((((((.....))))))).........(((((...(((.....((((..((((((..(((......((((((.(....).))))))....)))..))))))..)))))))..))))). (-23.04 = -23.86 +   0.82)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:45 2006