Locus 899

Sequence ID 2R_DroMel_CAF1
Location 4,046,045 – 4,046,157
Length 112
Max. P 0.701794
window1574

overview

Window 4

Location 4,046,045 – 4,046,157
Length 112
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.53
Mean single sequence MFE -47.38
Consensus MFE -36.31
Energy contribution -36.25
Covariance contribution -0.06
Combinations/Pair 1.03
Mean z-score -1.92
Structure conservation index 0.77
SVM decision value 0.35
SVM RNA-class probability 0.701794
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4046045 112 + 20766785
GUGGCAUGUGGCUGGC-------CGCUGGUG-GGCAAUGGCAAAUGGCAGGUGGCUCCGGUGGUCAGCCAAAAUGGAGUGCUGCGCACAAUGGAAUGCCGUGCUAUAAAUAAAGUGCCCG
(.(((((.((((((((-------((((((.(-(.((...((.....))...)).))))))))))))))))..((((.((((...)))).((((....)))).)))).......)))))). ( -49.10)
>DroSec_CAF1 28691 120 + 1
GUGGCAGGUGGCUGGCGGUCGGCGGCUGGUGGGGCAAUGGCAAAUGGCAGGUGGCUCCGGUGGUCAGCCAAAAUGGAGUGCUGCGCACAAUGGAAUGCCGAGCUAUAAAUAAAGUGCCCG
(.((((.((((((((((.((((((((((.((((((..((.(....).))....)))))).))))).)))........((((...))))....)).)))).))))))........))))). ( -46.50)
>DroSim_CAF1 33359 120 + 1
GUGGCAGGUGGCUGGCGGUCGGCGGCUGGUGGGGCAAUGGCAAAUGGCAGGUGGCUCCGGUGGUCAGCCAAAAUGGAGUGCUGCGCACAAUGGAAUGCCGAGCUAUAAAUAAAGUGCCCG
(.((((.((((((((((.((((((((((.((((((..((.(....).))....)))))).))))).)))........((((...))))....)).)))).))))))........))))). ( -46.50)
>DroYak_CAF1 31866 119 + 1
GUGGCUGGCGGCUGGCGGCUGGUGGCUGGUGG-GUGAUGGCAGGUGGCAGGUGGCUCCGGUGGUCAGCCAAAAUGGAGUGCUGCGCACAAUGGAAUGCCGUGCUAUAAAUAAAGUGCCCG
...((..((.((..(...)..)).))..))((-((.((((((.(((((((...((((((.(((....)))...)))))).)))).))).......))))))(((........))))))). ( -47.40)
>consensus
GUGGCAGGUGGCUGGCGGUCGGCGGCUGGUGGGGCAAUGGCAAAUGGCAGGUGGCUCCGGUGGUCAGCCAAAAUGGAGUGCUGCGCACAAUGGAAUGCCGAGCUAUAAAUAAAGUGCCCG
(.(((.....((..((.(....).))..))......(((((.....((((...((((((.(((....)))...)))))).))))(((........)))...))))).........)))). (-36.31 = -36.25 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:33 2006