Locus 897

Sequence ID 2R_DroMel_CAF1
Location 4,044,439 – 4,044,559
Length 120
Max. P 0.980566
window1568

overview

Window 8

Location 4,044,439 – 4,044,559
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.33
Mean single sequence MFE -35.72
Consensus MFE -28.68
Energy contribution -31.32
Covariance contribution 2.64
Combinations/Pair 1.03
Mean z-score -2.33
Structure conservation index 0.80
SVM decision value 1.86
SVM RNA-class probability 0.980566
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4044439 120 + 20766785
GGUGUCUUUAAGCCUGUUAGCUAAAAAGAAGAUAACCACAGUCAUAAUUGAUGAGUGCGAAAAUGGAACACGAAUCGUGGGCCAGCAGAACAUUCGUCUUCUUUCCGGGAGGCUGAUAGC
(.((((....(((((.(..(....(((((((((.......((((....))))(((((......(((..((((...))))..)))......)))))))))))))))..).))))))))).) ( -34.90)
>DroSec_CAF1 27109 112 + 1
GCUGUCUUUAAGCCUGUUAGCUAAAAAGAAGAUAACCACAGUCAUAAUUGAUGA--------AUGGAACACGAUUCGUGGCCCAGGAGAACAUUCGUCUUCUUUCUGGGAGGCUGAUAGC
((((((....(((((.((((....(((((((((..((...((((....))))..--------.(((..((((...))))..))))).((....))))))))))))))).))))))))))) ( -36.90)
>DroSim_CAF1 31774 120 + 1
GCUGUCUUUAAGCCUGUUAGCUAAAAAGAAGAUAACCACAGUCAUAAUUGAUGAGUGCGAAAAUGGAACACGAUUCGUGGCCCAGGAGAACAUUCGUCUUCUUUCUGGGAGGCUGAUAGC
((((((....(((((.((((....(((((((((.......((((....))))(((((......(((..((((...))))..)))......)))))))))))))))))).))))))))))) ( -41.00)
>DroEre_CAF1 26563 120 + 1
GUUGUCUUUAAGCCUAUUAAGUAAAAACAAGAUAACCACAGUCUUAAUUGAUGAGUGCGAAAAUGGAACACGAAUCGUGAGCCAGGAGAACAUUCGUCUUCUGUCUGGGAGGCCGAUAGC
((((((.....((((.....((....)).......((.(((.(......((((((((......(((..((((...))))..)))......))))))))....).))))))))).)))))) ( -30.60)
>DroYak_CAF1 30384 120 + 1
GUUGUCUUUAAGCCUGUUAGCUAACAACAAGAUAACCACAGUCAUAAUUGAUGAGUGCGAAAAUGGAACACAAAUCGUGGGCCAGCAGAACAUUAGUCUUCCUUCUGGAAGGCUGAUAGC
((((((((..(((......)))......))))))))(.((.((((.....)))).)).)....(((..(((.....)))..))).......(((((((((((....)))))))))))... ( -35.20)
>consensus
GCUGUCUUUAAGCCUGUUAGCUAAAAAGAAGAUAACCACAGUCAUAAUUGAUGAGUGCGAAAAUGGAACACGAAUCGUGGGCCAGGAGAACAUUCGUCUUCUUUCUGGGAGGCUGAUAGC
((((((....(((((.((((....(((((((((.......((((....))))(((((......(((..(((.....)))..)))......)))))))))))))))))).))))))))))) (-28.68 = -31.32 +   2.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:27 2006