Locus 888

Sequence ID 2R_DroMel_CAF1
Location 4,038,423 – 4,038,543
Length 120
Max. P 0.987967
window1549

overview

Window 9

Location 4,038,423 – 4,038,543
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.67
Mean single sequence MFE -38.69
Consensus MFE -34.20
Energy contribution -34.20
Covariance contribution -0.00
Combinations/Pair 1.13
Mean z-score -1.86
Structure conservation index 0.88
SVM decision value 2.10
SVM RNA-class probability 0.987967
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4038423 120 - 20766785
AAAGGCGUUGCCAUGCCUUUUACCUUUGGCUCCUAUUUCGCCGACGCUCAGGCUCAGUGUUUUGCUUACUUAUUCAUUUGAUAAAGUGAGGCGGAAUGCGGGGACCGCGUCCCACUUCAA
...((((.......(((..........)))........))))(((((...(((((.(((((((((((((((..((....))..)))))).))))))))).))).)))))))......... ( -38.36)
>DroSec_CAF1 21009 120 - 1
AAAGGCGUUGCCAUGCCUUUUACCUUUGGCUCCUAUUUCGCCGACGCUCAGGCUCAGUGUUUUGCUUACUUAUUCAUUUGAUAAAGUAAGGCGGAAUGUGGGGACCGCGUCCCACUUCAA
((((((((....)))))))).......(((((((((((((((((((((.......))))))....((((((..((....))..))))))))))))))).)))).)).............. ( -36.80)
>DroSim_CAF1 23165 120 - 1
AAAGGCGUUGCUAUGCCUUUUACCUUUGGCUCCUAUUUCCCCGACGCUCAGGCUCAGUGUUUUGCUUACUUAUUCAUUUGAUAAAGUGAGGCGGAAUGCGGGGACCGCGUCCCACUUCAA
((((((((....))))))))......(((..(.....(((((((.((....)))).(((((((((((((((..((....))..)))))).))))))))))))))....)..)))...... ( -36.70)
>DroEre_CAF1 20190 120 - 1
AAAGGCGUUGCCAUGCCAUUUACCUUUGGCUCCCAUUUCGCCGGCGCUCCGCCUCAGUGUUUUGCUUACUUAUUCAUUUGAUAAAGUGAGGCGGAAUGCGGGGACCGCGUCCCACUUCAA
...((((.((....((((........))))...))...)))).(((.(((((((((((.....))).((((..((....))..)))))))))))).))).(((((...)))))....... ( -42.90)
>DroYak_CAF1 24295 119 - 1
AAAGGCGAUGCCAUCCCUUUUACCUGUGGCUCCUAUUUCGCCGACGCUCCGC-UCAGUGUUUUGCUUACUUAUUCAUUUGAUAAAGUGGGGCGGAAUGCGGGGACCACGUCCCACUUCAA
...(((((.(((((...........))))).......)))))..((((((((-((((((.......))))....(((((....))))))))))))..)))(((((...)))))....... ( -38.70)
>consensus
AAAGGCGUUGCCAUGCCUUUUACCUUUGGCUCCUAUUUCGCCGACGCUCAGGCUCAGUGUUUUGCUUACUUAUUCAUUUGAUAAAGUGAGGCGGAAUGCGGGGACCGCGUCCCACUUCAA
((((((((....))))))))......((((((((((((((((((((((.......))))))....((((((..((....))..))))))))))))))).)))).)))............. (-34.20 = -34.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:08 2006