Locus 887

Sequence ID 2R_DroMel_CAF1
Location 4,038,222 – 4,038,337
Length 115
Max. P 0.986120
window1548

overview

Window 8

Location 4,038,222 – 4,038,337
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.67
Mean single sequence MFE -39.00
Consensus MFE -34.36
Energy contribution -34.20
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.90
Structure conservation index 0.88
SVM decision value 2.03
SVM RNA-class probability 0.986120
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4038222 115 - 20766785
ACAGCUUCUGGAAUGCGAAAUGUGCCUGAGCUCAUUUCGGUCUGUGUAAAGCAAUUUCCGUAAUGAGUGCUCUCCUGCAGAGCACUUAAAAGUAUUUGGGGCCGCCCCCUUGCGC-----
...((.....((((((((((((.((....)).))))))((....((.....))....))....((((((((((.....))))))))))...))))))((((....))))..))..----- ( -37.50)
>DroSec_CAF1 20808 115 - 1
ACAGCUUCUGGAAUGCGAAAUGUGCCUGAGCUCAUUUCGGUCUGUGUAAAGCAAUUUCCGUAAUGAGUGCUCUCCUGCAGAGCACUUAAAAGUAUUUGGGGCCGCCUCCCUGCGC-----
...(((((..((((((((((((.((....)).))))))((....((.....))....))....((((((((((.....))))))))))...)))))))))))(((......))).----- ( -35.90)
>DroSim_CAF1 22964 115 - 1
ACAGCUUCUGGAAUGCGAAAUGUGCCUGAGCUCAUUUCGGUCUGUGUAAAGCAAUUUCCGUAAUGAGUGCUCUCCUGCAGAGCACUUAAAAGUAUUUCGGGCCGCCUCCUUGCGC-----
...((....(((..((((((((.((....)).))))))((((((.(.(((....))).)....((((((((((.....)))))))))).........)))))))).)))..))..----- ( -37.80)
>DroEre_CAF1 19971 120 - 1
ACCGCUUCUGGAAUGCGAAAUGUGCCUGAGCUCAUUUCGGUCUGUGUAAAGCAAUUUCCGUAAUGAGUGCUCUCCUGCAGAGCACUUAAAAGUAUUUGGGGGCGCCUCCUUGCGCCUCCU
...((((..((((..(((((((.((....)).)))))))...(((.....)))..))))....((((((((((.....)))))))))).))))....((((((((......)))))))). ( -45.70)
>DroYak_CAF1 24092 118 - 1
ACAGCUUCUGGAAUGCGAAAUGUGCCUGAGCUCAUUUCGGUCUGUGUAAAGCAAUUUCCGUAAUGAGUGCUCUCCUGCAGAGCACUUAAAAGUAUUUGGGGCUGCCUCCUUGCGCCUU--
.(((((((..((((((((((((.((....)).))))))((....((.....))....))....((((((((((.....))))))))))...)))))))))))))..............-- ( -38.10)
>consensus
ACAGCUUCUGGAAUGCGAAAUGUGCCUGAGCUCAUUUCGGUCUGUGUAAAGCAAUUUCCGUAAUGAGUGCUCUCCUGCAGAGCACUUAAAAGUAUUUGGGGCCGCCUCCUUGCGC_____
......(((.((((((((((((.((....)).))))))((....((.....))....))....((((((((((.....))))))))))...)))))).))).(((......)))...... (-34.36 = -34.20 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:07 2006