Locus 886

Sequence ID 2R_DroMel_CAF1
Location 4,037,373 – 4,037,493
Length 120
Max. P 0.754913
window1547

overview

Window 7

Location 4,037,373 – 4,037,493
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.83
Mean single sequence MFE -35.62
Consensus MFE -26.96
Energy contribution -26.84
Covariance contribution -0.12
Combinations/Pair 1.21
Mean z-score -1.82
Structure conservation index 0.76
SVM decision value 0.49
SVM RNA-class probability 0.754913
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4037373 120 + 20766785
AUUCUCCAUUCAUGCCCGUCAUCGCUGCCGUUUAGGACGUCUUUAAAGUUGACCAGGUCAACAAUGGCUUUGCGGCUUGCUCUACAAGUUGGCUUUAAAGGCACUCAUCACAUGGCCACU
.............(((.(((...((....))....)))(((((((((((..((((((((..(((.....))).))))))........))..)))))))))))...........))).... ( -29.30)
>DroSec_CAF1 19956 120 + 1
AUUCUCCAUUCAUGCCCGUCAUCGCUGGCGUUUAGGACGUCUUUAAAGUUGACCAGGUCAACAAUGGCUUUGCGGCUGGCUCUACAAGUUGGCUUUAAAGGCACUCAUCACAUGACCAUU
....(((....(((((.((....)).)))))...))).(((......((((((...))))))..((.(((((.(((..(((.....)))..))).))))).))..........))).... ( -32.70)
>DroSim_CAF1 22113 120 + 1
AUUCUACAUUCAUGCCCGUCAUCGCUGGCGUUUAGGACGUCUUUAAAGUUGGCCAGGUCAACAAUGGCUUUGCGGCUGGCUCUACAAGUUGGCUUUAAAGGCACUCAUCACAUGACCAUU
.........((((((((((((....)))))....))..(((((((((....((.((((((....)))))).)).((..(((.....)))..)))))))))))........)))))..... ( -32.00)
>DroEre_CAF1 19067 120 + 1
AUUCGCCAUAAAUGCGCGUCAUCGCUGGCGUUUAGGAGGUCCUUAAAGUUGACCAGGUCAACGCAGGCUGCGUGGCCUGCUCCACAAGUUGGCUUUAAAGGCACUCAUCACUUGGCCACU
....((((((((((((((....)))..))))))).((((((.(((((((..(((((((((.(((.....))))))))))........))..))))))).))).)))......)))).... ( -46.00)
>DroYak_CAF1 23241 112 + 1
AUUCCCCAUAAAUGCCCGUUAUCGCUGGCAUUUAGGACGUCUUUAAAGUUGACCAGGUCAACGAAAGCUUUGUGGCUUGCUCUACAAGUUGGCUUUAAAGACACUCAUCAC--------U
.....((.((((((((.((....)).))))))))))..(((((((((((..(((((((((.(....).....)))))))........))..))))))))))).........--------. ( -38.10)
>consensus
AUUCUCCAUUCAUGCCCGUCAUCGCUGGCGUUUAGGACGUCUUUAAAGUUGACCAGGUCAACAAUGGCUUUGCGGCUUGCUCUACAAGUUGGCUUUAAAGGCACUCAUCACAUGACCACU
.....((....(((((.((....)).)))))...))..(((((((((((..((...((......(((((....))))).....))..))..))))))))))).................. (-26.96 = -26.84 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:06 2006