Locus 882

Sequence ID 2R_DroMel_CAF1
Location 4,034,522 – 4,034,642
Length 120
Max. P 0.814136
window1539

overview

Window 9

Location 4,034,522 – 4,034,642
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.00
Mean single sequence MFE -24.36
Consensus MFE -23.74
Energy contribution -23.74
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.97
SVM decision value 0.66
SVM RNA-class probability 0.814136
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4034522 120 + 20766785
UGCCAACUUUGUUGCACAGCUGAAAAAUAAAACGCAAGUGGAAACUCAAGUUAGCCAGGAUAUAAAUAGGAAAGCACAACGACCAGAAACGGAAGGGAAGUGAAUUAUAAAUGUUGGUAG
((((((((((((..(((.(((((........((....))(....).....)))))..................................(....)....)))....))))).))))))). ( -23.90)
>DroSec_CAF1 17149 120 + 1
UGCCAACUUUGUUGCACAGCUGAAAAAUAAAACGCAAGUGGAAACUCAAGUUAGCCAGGAUAUAAAUAGGAAAGCACAACGACCAGAAACGGAAGGGAAGUGAAUUAUAAAUGUUGGUAC
((((((((((((..(((.(((((........((....))(....).....)))))..................................(....)....)))....))))).))))))). ( -23.60)
>DroSim_CAF1 19296 120 + 1
UGCCAACUUUGUUGCACAGCUGAAAAAUAAAACGCAAGUGGAAACUCAAGUUAGCCAGGAUAUAAAUAGGAAAGCACAACGACCAAAAACGGAAGGGAAGUGAAUUAUAAAUGUUGGUAG
((((((((((((..(((.(((((........((....))(....).....)))))..................................(....)....)))....))))).))))))). ( -23.90)
>DroEre_CAF1 16448 120 + 1
UGCCAACUUUGUUGCACAGCUGAAAAAUAAAACGCAAGUGGAAACUCAAGUUAGCCAGGAUAUAAAUAGGAAAGCACAACGACCAGAAACGGAAGGGAAGUGAAUUAUAAAUGUUGGUAG
((((((((((((..(((.(((((........((....))(....).....)))))..................................(....)....)))....))))).))))))). ( -23.90)
>DroYak_CAF1 20313 120 + 1
UGCCAACUUUGUUGCACAGCUGAAAAAUAAAACGCAAGUGGAAACUCAAGUUAGCCAGGAUAUAAAUAGGAAAGCACAACGACCAGCAGCGGGUGGGAAGUGAAUUAUAAAUGUUGGUAG
((((((((((((..(((.(((((........((....))(....).....)))))...........................(((.(....).)))...)))....))))).))))))). ( -26.50)
>consensus
UGCCAACUUUGUUGCACAGCUGAAAAAUAAAACGCAAGUGGAAACUCAAGUUAGCCAGGAUAUAAAUAGGAAAGCACAACGACCAGAAACGGAAGGGAAGUGAAUUAUAAAUGUUGGUAG
((((((((((((..(((.(((((........((....))(....).....)))))........................(..((......))..)....)))....))))).))))))). (-23.74 = -23.74 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:58 2006