Locus 87

Sequence ID 2R_DroMel_CAF1
Location 1,338,132 – 1,338,240
Length 108
Max. P 0.623711
window177

overview

Window 7

Location 1,338,132 – 1,338,240
Length 108
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.42
Mean single sequence MFE -22.41
Consensus MFE -15.27
Energy contribution -15.58
Covariance contribution 0.31
Combinations/Pair 1.17
Mean z-score -1.66
Structure conservation index 0.68
SVM decision value 0.18
SVM RNA-class probability 0.623711
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1338132 108 - 20766785
--------ACCAUUUGUUAUUUUAAUUAAUCUCAUUAAAUGGCGUCCACUUUGAGCUACAGCUUUUUGGCGAACCUUAGUUGCCCAUAUGCUGCCAGCCAACCCAACC----ACCUUCCC
--------.(((((((...................)))))))........(((.(((.((((.....(((((.......))))).....))))..)))))).......----........ ( -19.41)
>DroSec_CAF1 56598 111 - 1
--------GCCAUUUGUUAUUUUAAUUAAUCUCAUUAAAUGGCGUCCACUUUGAGCUACAGCUUUUUGGCGAGCUUUGGUUGCCCAUAUGCUGCCAGACAACCCAACCACC-ACCUUUCC
--------((((((((...................))))))))(((......((((....))))..((((.(((..(((....)))...))))))))))............-........ ( -26.31)
>DroSim_CAF1 34812 111 - 1
--------GCCAUUUGUUAUUUUAAUUAAUCUCAUUAAAUGGCGUCCACUUUGAGCUACAGCUUUUUGGUGAGCUUUGGUUGCCCAUAUGCUGCCAGACAACCCAACCACC-ACCUUUCC
--------((((((((...................))))))))(..((((..((((....))))...))))..)((((((.((......)).)))))).............-........ ( -26.41)
>DroYak_CAF1 25196 114 - 1
UGCGCACUAUCAUUUGUUAUUUUAAUUAAUCUCGUUUAAUGGCGUCUACUUUGAGCUACAGCUUUUUGACAAGCCUACGUUGUCCAUAUGCUGCCAGCCAACACAACCACACAC------
.((((((........)).......(((((......))))).)))).....(((.(((.((((.....(((((.......))))).....))))..)))))).............------ ( -17.50)
>consensus
________ACCAUUUGUUAUUUUAAUUAAUCUCAUUAAAUGGCGUCCACUUUGAGCUACAGCUUUUUGGCGAGCCUUGGUUGCCCAUAUGCUGCCAGACAACCCAACCACC_ACCUUUCC
........((((((((...................)))))))).......(((.(((.((((.....(((.(((....)))))).....))))..))))))................... (-15.27 = -15.58 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:24 2006