Locus 869

Sequence ID 2R_DroMel_CAF1
Location 4,023,791 – 4,023,904
Length 113
Max. P 0.578041
window1503

overview

Window 3

Location 4,023,791 – 4,023,904
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.42
Mean single sequence MFE -34.68
Consensus MFE -24.69
Energy contribution -25.94
Covariance contribution 1.25
Combinations/Pair 1.08
Mean z-score -1.66
Structure conservation index 0.71
SVM decision value 0.09
SVM RNA-class probability 0.578041
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4023791 113 - 20766785
UUAUUUAAGGCCAUGGGCAACGGGAGUCCGCAAGCCCUGGCUGAAAUAUUAAAUUAUUUGCCGGCCAUAAACAGGGCUUCAUGGUCAGGCAAGGGCGCACACGCAGUAAGUA-------G
.((((((.(((((.((((..(((....)))...)))))))))..............((((((((((((.((......)).)))))).)))))).(((....)))..))))))-------. ( -37.20)
>DroSec_CAF1 6583 113 - 1
UUAUUUAAGGCCACGGGCAAUGGGAGUCCGCAAGCCCUGGCUGAAAUAUAAAAUUAUUUGCCGGCCAUAAACAGGGCUUCAUGGUCAGGCAAGGGCGCACACGCAGUAAGUA-------G
.((((((.(((((.((((..(((....)))...)))))))))..............((((((((((((.((......)).)))))).)))))).(((....)))..))))))-------. ( -35.50)
>DroSim_CAF1 8641 113 - 1
UUAUUUAAGGCCACGGGCGACGGGAGUCCGCAAGCCCUGGCUGAAAUAUAAAAUUAUUUGCCGGCCAUAAACAGGGCUUCAUGGUCAGGCAAGGGCGCACACGCAGUAAGUA-------G
.((((((.(((((.((((..(((....)))...)))))))))..............((((((((((((.((......)).)))))).)))))).(((....)))..))))))-------. ( -38.30)
>DroEre_CAF1 5920 101 - 1
UUAUUUAAGUCC-------------------UGGCCCUGGCUAAAAUAUUAAAUUAUUUGCCGUCCAUAAACAGGACCUCGUGGUCAGGCAACAGCGCACACGCAGUAAGUAGGCAGUAG
(((((((.(.((-------------------((((((.(((..(((((......))))))))((((.......))))...).))))))))....(((....)))..)))))))....... ( -27.80)
>DroYak_CAF1 8353 104 - 1
UUAUUUAAGGCCGUGG---------GUCCGCAAGCCCUGGCUGAAAUAUUAAAUUAUUUGCCGGCCAUAAACAGGGCUUCAUGGUCAGGCAAGGGCGCACACGCAGUAAGUA-------G
.((((((..((.(((.---------((((...(((....)))...............(((((((((((.((......)).)))))).))))))))).)))..))..))))))-------. ( -34.60)
>consensus
UUAUUUAAGGCCACGGGC_A_GGGAGUCCGCAAGCCCUGGCUGAAAUAUUAAAUUAUUUGCCGGCCAUAAACAGGGCUUCAUGGUCAGGCAAGGGCGCACACGCAGUAAGUA_______G
.((((((.((((((((((.......))))).(((((((((((((((((......)))))..)))))......)))))))..)))))........(((....)))..))))))........ (-24.69 = -25.94 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:22 2006