Locus 866

Sequence ID 2R_DroMel_CAF1
Location 4,021,103 – 4,021,223
Length 120
Max. P 0.984351
window1499

overview

Window 9

Location 4,021,103 – 4,021,223
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 90.29
Mean single sequence MFE -30.34
Consensus MFE -28.79
Energy contribution -28.13
Covariance contribution -0.66
Combinations/Pair 1.09
Mean z-score -2.65
Structure conservation index 0.95
SVM decision value 1.97
SVM RNA-class probability 0.984351
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4021103 120 - 20766785
AAAAGCAUUUUGGAAAAGUGUGCUUCUUAGGUCUUCGGACUUAAAAAUACAUUUUAGCAUACUUUGAGGUAACUUUAAUGGUGUAUGGGAAACCUUGGUUUAUGAGAGAAGGUUAUGAAA
..............((((((((((..(((((((....)))))))...........))))))))))...((((((((..(.(((...((....))......))).)...)))))))).... ( -30.02)
>DroSec_CAF1 3917 110 - 1
AAAAGCAUUUUGGAAAAGUGUGCUUCUUAGGUCUUCGGACUUAAAAAUACAUUUUAGCAUACCUUGAGGUAACUUUUAUGGUGUAUGGGAAACCUUGGCUUAUGAGUUUA----------
..(((((((((....))).)))))).(((((((....)))))))((((.(((...((((((((..(((....)))....)))))..((....))...))).))).)))).---------- ( -30.70)
>DroSim_CAF1 5974 110 - 1
AAAAGCAUUUUGGAAAAGUGUGCUUCUUGGGUCUUCGGACUUAAAAAUACAUUUUAGCAUACCUUGAGGUAACUUUUAUGGUGUAUGGGAAACCUUGGCUUAUGAGUUUA----------
..(((((((((....))).)))))).(((((((....)))))))((((.(((...((((((((..(((....)))....)))))..((....))...))).))).)))).---------- ( -30.30)
>consensus
AAAAGCAUUUUGGAAAAGUGUGCUUCUUAGGUCUUCGGACUUAAAAAUACAUUUUAGCAUACCUUGAGGUAACUUUUAUGGUGUAUGGGAAACCUUGGCUUAUGAGUUUA__________
..(((((((((....))).)))))).(((((((....))))))).....(((...((((((((..(((....)))....)))))..((....))...))).)))................ (-28.79 = -28.13 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:18 2006