Locus 865

Sequence ID 2R_DroMel_CAF1
Location 4,020,944 – 4,021,063
Length 119
Max. P 0.915071
window1498

overview

Window 8

Location 4,020,944 – 4,021,063
Length 119
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 93.84
Mean single sequence MFE -41.23
Consensus MFE -36.99
Energy contribution -37.10
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.50
Structure conservation index 0.90
SVM decision value 1.10
SVM RNA-class probability 0.915071
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4020944 119 + 20766785
AAGGGCCAAUUAAAGUGGCCGAGAGAGGAAAUCGUUCCAGCCACUCGCUCUGGAGAUGAUCAGAGUGGGCCUGAUAACGCUGAUAACGAGAAUGGAAGCGCAAGCAGCCUGAUAGUCAA
..(((((......(((((((....).((((....)))).))))))((((((((......)))))))))))))(((..((.......)).....((..((....))..)).....))).. ( -39.90)
>DroSec_CAF1 3775 119 + 1
GAGGGCCAAUUAAAGUGGCCGAGAGAGGAAAUCGUUCCAGCCACACGCUCUGGAGAUGAUCGGAGUGGGCCUGAUAGCGCUGAUAACGAGAAUGGAAGCGCAAGCAGCCAGAUAGUCAU
..(((((.......((((((....).((((....)))).))))).((((((((......))))))))))))).................((.(((..((....))..))).....)).. ( -40.90)
>DroSim_CAF1 5832 119 + 1
GAGGGCCAAUUAAAGUGGCCGAGAGCGGAAAUCGUUACAGCCACACGCUCUGGAGAUGAUCAGAGUGGGCCUUAUAGCGCUGAUAACGCGAAGGGAAGCGCAAGCAGCCAGAUAGUCAU
.((((((.......(((((....((((.....))))...))))).((((((((......))))))))))))))...(((.......)))....((..((....))..)).......... ( -42.90)
>consensus
GAGGGCCAAUUAAAGUGGCCGAGAGAGGAAAUCGUUCCAGCCACACGCUCUGGAGAUGAUCAGAGUGGGCCUGAUAGCGCUGAUAACGAGAAUGGAAGCGCAAGCAGCCAGAUAGUCAU
..(((((.......((((((....).((((....)))).))))).((((((((......))))))))))))).....................((..((....))..)).......... (-36.99 = -37.10 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:17 2006