Locus 861

Sequence ID 2R_DroMel_CAF1
Location 4,017,306 – 4,017,410
Length 104
Max. P 0.979411
window1491

overview

Window 1

Location 4,017,306 – 4,017,410
Length 104
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.53
Mean single sequence MFE -40.38
Consensus MFE -32.04
Energy contribution -33.10
Covariance contribution 1.06
Combinations/Pair 1.15
Mean z-score -2.68
Structure conservation index 0.79
SVM decision value 1.84
SVM RNA-class probability 0.979411
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4017306 104 - 20766785
----------------CGCAAAUCCGCAUAUGAGCCAUGGCUGUGCAGUUAACUCAUUAAAAACGGCCAAAAAACAAGGGCCGGCGAUGGGGCGUAUGCGUAACAAUGUUGGCGUUUUUA
----------------(((.....((((((((..((((.((.(((.((....)))))......(((((..........))))))).))))..))))))))((((...)))))))...... ( -33.50)
>DroSec_CAF1 178 120 - 1
GGAAUGCCGGAAAAACCGCAAAUCCGCAUGUGAGUCAUGGCUGUGCAGUUAACUCAUUAAAAACGGCCAAAAAACAAGGGCCGGCGAUGGAGCGUAUGCGUAACAUUGUUGGCGCUUUUA
(((.(((.((.....)))))..)))............(((((((....((((....))))..)))))))......(((.((((((((((..(((....)))..)))))))))).)))... ( -39.90)
>DroSim_CAF1 2230 120 - 1
GGAAUGCCGGAAAAACCGCAAAUCCGCAUGUGAGCCAUGGCUGUGCAGUUAACUCAUUAAAAACGGCCAAAAAACAAGAGCCGGCGAUGGGGCGUAUGCGUAACAUUGUUGGCGCUUUUA
(((.(((.((.....)))))..)))......((((..(((((((....((((....))))..)))))))..........((((((((((..(((....)))..))))))))))))))... ( -41.30)
>DroEre_CAF1 159 119 - 1
GGAACGCCGGGAAAACCGCAAAUCCUCAUGUGAGCCUUGGCCGCGCAGUUAACUCAUUAAAAACGGCGGAAAAACAAG-GCCGGCGAUGGGGCGUAUGCGUAACAUUGUCGGCGUUUCUA
((((((((((.((...((((.((((((((((..((((((.((((...(((...........))).)))).....))))-))..)).)))))).)).)))).....)).)))))))))).. ( -46.80)
>consensus
GGAAUGCCGGAAAAACCGCAAAUCCGCAUGUGAGCCAUGGCUGUGCAGUUAACUCAUUAAAAACGGCCAAAAAACAAGGGCCGGCGAUGGGGCGUAUGCGUAACAUUGUUGGCGCUUUUA
(((....(((.....)))....)))......((((..(((((((....((((....))))..)))))))..........((((((((((..(((....)))..))))))))))))))... (-32.04 = -33.10 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:10 2006