Locus 86

Sequence ID 2R_DroMel_CAF1
Location 1,337,946 – 1,338,064
Length 118
Max. P 0.506169
window176

overview

Window 6

Location 1,337,946 – 1,338,064
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.92
Mean single sequence MFE -27.28
Consensus MFE -24.68
Energy contribution -24.08
Covariance contribution -0.60
Combinations/Pair 1.13
Mean z-score -1.11
Structure conservation index 0.90
SVM decision value -0.05
SVM RNA-class probability 0.506169
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1337946 118 + 20766785
AAGGGAUAACACGGAAUCUUUUCAAA--AAAUUCAGCAAAGGCGUCCGGGUUUUCCAGUUGCGAGCACAAUAUGGCCAAAACAAAGCUCAAUAUGCUCAUAAUCAGAUGAAGCCGCCCAU
..(((......((((..((((((...--.......).)))))..))))(((((((..((((.(((((......(((.........))).....))))).))))..))..))))).))).. ( -25.40)
>DroSec_CAF1 56404 117 + 1
AAGGGAUAACACGGAAUCUUUUCAAA--AAAUUCAGCAAAGGCGUCCGGGCU-UCCAGUUGCGAGCACAAUAUGGCCAAAACAAAGCUCAAUAUGCUCAUAAUCAGAUGAAGCCGCCCAU
..(((......((((..((((((...--.......).)))))..))))((((-((..((((.(((((......(((.........))).....))))).)))).....)))))).))).. ( -28.70)
>DroSim_CAF1 34618 117 + 1
AAGGGAUAACACGGAAUCUUUUCAAA--AAAUUCAGCAAAGGCGUCCGGGCU-UCCAGUUGCGAGCACAAUAUGGCCAAAACAAAGCUCAAUAUGCUCAUAAUCAGAUGAAGCCGCCCAU
..(((......((((..((((((...--.......).)))))..))))((((-((..((((.(((((......(((.........))).....))))).)))).....)))))).))).. ( -28.70)
>DroEre_CAF1 37853 117 + 1
AAGGGAUAACACGGAAUCUUUUCAAA--AAAUUCAGCAAGGCCGUCCGGGCU-UCCAGUUGCGAGCACAAUAUGGCCAAAACAAAGCUCGAUGUGCUCAUAAUCAGAUGAAGUCGCCCAU
..(((......((((..((((.(...--.......).))))...))))((((-((..((((.(((((((....(((.........)))...))))))).)))).....)))))).))).. ( -29.90)
>DroYak_CAF1 25014 119 + 1
GAGGGAUAACACUGAAUCUUUUUAAAAAAAAUCCAGAAAGGGCGUCCGGGUU-UCCAGUUGCGAGCACAAUAUGGCCAAAACAAAGCUCAAUAUGCUCAUAAUCAGAUGAAGCCGCCCAU
...((((.....((((....))))......)))).....((((.....((((-((..((((.(((((......(((.........))).....))))).)))).....)))))))))).. ( -23.70)
>consensus
AAGGGAUAACACGGAAUCUUUUCAAA__AAAUUCAGCAAAGGCGUCCGGGCU_UCCAGUUGCGAGCACAAUAUGGCCAAAACAAAGCUCAAUAUGCUCAUAAUCAGAUGAAGCCGCCCAU
..(((......((((..((((.(............).))))...))))((((.((..((((.(((((......(((.........))).....))))).))))..))...)))).))).. (-24.68 = -24.08 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:22 2006