Locus 858

Sequence ID 2R_DroMel_CAF1
Location 4,015,139 – 4,015,240
Length 101
Max. P 0.986512
window1482 window1483

overview

Window 2

Location 4,015,139 – 4,015,240
Length 101
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 97.39
Mean single sequence MFE -33.60
Consensus MFE -32.70
Energy contribution -32.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.96
Structure conservation index 0.97
SVM decision value 2.04
SVM RNA-class probability 0.986512
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4015139 101 + 20766785
UGAGUCCCAAGUGUCGAUGGCUGAUAACAGCCGGAAGCCAAGUACAG--AAGCCUCGACGGCCACAGGGGCGAAAGCUCAAAAGACAAAGACUUUGGGGAAAA
....(((((((.(((..((((((....))))))........((....--..(((.....))).....((((....)))).....))...)))))))))).... ( -32.70)
>DroSim_CAF1 246 103 + 1
UGAGUCCCAAGUGUCGAUGGCUGAUAACAGCCGGAAGCCAAGUACAGAGAAGCCUCGACGGCCACAGGGGCGAAAGCUCAAAAGACAAAGACUUUGGGGAAAA
....(((((((.(((..((((((....))))))...(((..((...(((....))).))))).....((((....))))..........)))))))))).... ( -35.00)
>DroYak_CAF1 23 100 + 1
UGAGUCCCAAGUGUCGAUGGCUGAUAACAGCCGGAAGCCAAGUACAG---AGCCUCAACGGCCACAGGGGCGAAAGCUCAAAAGACAAAGACUUUGGGGAAAA
....(((((((.(((..((((((....))))))........((...(---.(((.....))))....((((....)))).....))...)))))))))).... ( -33.10)
>consensus
UGAGUCCCAAGUGUCGAUGGCUGAUAACAGCCGGAAGCCAAGUACAG__AAGCCUCGACGGCCACAGGGGCGAAAGCUCAAAAGACAAAGACUUUGGGGAAAA
....(((((((.(((..((((((....))))))........((........(((.....))).....((((....)))).....))...)))))))))).... (-32.70 = -32.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 4,015,139 – 4,015,240
Length 101
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 97.39
Mean single sequence MFE -29.52
Consensus MFE -29.05
Energy contribution -29.05
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.98
SVM decision value 0.76
SVM RNA-class probability 0.842949
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4015139 101 - 20766785
UUUUCCCCAAAGUCUUUGUCUUUUGAGCUUUCGCCCCUGUGGCCGUCGAGGCUU--CUGUACUUGGCUUCCGGCUGUUAUCAGCCAUCGACACUUGGGACUCA
...((((.((((.(((........))))))).(((.....))).(((((((((.--........)))))).(((((....)))))...)))....)))).... ( -28.90)
>DroSim_CAF1 246 103 - 1
UUUUCCCCAAAGUCUUUGUCUUUUGAGCUUUCGCCCCUGUGGCCGUCGAGGCUUCUCUGUACUUGGCUUCCGGCUGUUAUCAGCCAUCGACACUUGGGACUCA
.....(((((.(((..........(((((...........((((.....))))...........)))))..(((((....)))))...)))..)))))..... ( -29.05)
>DroYak_CAF1 23 100 - 1
UUUUCCCCAAAGUCUUUGUCUUUUGAGCUUUCGCCCCUGUGGCCGUUGAGGCU---CUGUACUUGGCUUCCGGCUGUUAUCAGCCAUCGACACUUGGGACUCA
.....(((((.(((...(((....(((((((.(((.....)))....))))))---).......)))....(((((....)))))...)))..)))))..... ( -30.60)
>consensus
UUUUCCCCAAAGUCUUUGUCUUUUGAGCUUUCGCCCCUGUGGCCGUCGAGGCUU__CUGUACUUGGCUUCCGGCUGUUAUCAGCCAUCGACACUUGGGACUCA
.....(((((.(((..........(((((...........((((.....))))...........)))))..(((((....)))))...)))..)))))..... (-29.05 = -29.05 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:02 2006