| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,014,863 – 4,014,954 |
| Length | 91 |
| Max. P | 0.899118 |
| Location | 4,014,863 – 4,014,954 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 82.10 |
| Mean single sequence MFE | -21.73 |
| Consensus MFE | -15.50 |
| Energy contribution | -15.25 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4014863 91 + 20766785 AAGGGGAAAAGGGAAAAGGGGAAAGGGAAACGUGGCCCACGAGUCAAUCAGGUUCGAUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUG .(((((............(((..(.(....).)..))).(((..(.....)..))).............................))))). ( -23.30) >DroSec_CAF1 23515 84 + 1 AAGGGGCAAGGGGAAG-------GGGGAAACAUGGCCCACUAGUCAAUCAGGUUCGAUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUG .(((((..(((((...-------..(....)....))).))....(((((..(((....)))....)))))..............))))). ( -19.50) >DroEre_CAF1 21386 81 + 1 CAGGGGUAAGGGGAAAC---------AACUCGUGGGCCA-GAGUCAAUCAGGAUCGGUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUG (((((((..(((.....---------..))).(((((((-...((.(((......))).)).....)))))))...........))))))) ( -24.50) >DroYak_CAF1 22740 77 + 1 AAGGGGAAAAGGGAAAC--------------GUGGCCCACGAGUCAAUCAGGUUCGGUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUA .(((((.....(....)--------------.((((((((((..(.....)..)).)))).....((......))...))))...))))). ( -19.60) >consensus AAGGGGAAAAGGGAAAC_________GAAACGUGGCCCACGAGUCAAUCAGGUUCGAUGGAAAAAAUGGUUCAAUAAAGUCAACACCCCUG .(((((..........................((..(((....((.(((......))).)).....)))..)).....(....).))))). (-15.50 = -15.25 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:01 2006