| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,997,866 – 3,997,958 |
| Length | 92 |
| Max. P | 0.830584 |
| Location | 3,997,866 – 3,997,958 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 83.62 |
| Mean single sequence MFE | -20.57 |
| Consensus MFE | -15.99 |
| Energy contribution | -16.10 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.830584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3997866 92 + 20766785 UGGCAGACUGCAGUCGCUGUUCCGGUUGGAAAUGCACUUUUCCUCCGCCACA-------UCGCCUCCGAUCCC-UCUCUGCAAUCCCAACUUCCCACUCU (((..((.(((((.....((..(((..(((((......))))).)))..))(-------(((....))))...-...))))).)))))............ ( -20.00) >DroSec_CAF1 7871 100 + 1 UGGCAGACUUUAGUCGCUGUUCCGGUUGAAAAUUCACUUUUCCUCCGCCGCAUCGCGCAUCGCCUGCUAUCCCCUAUCCCCAAUCCCCACUUCCCACUCC .(((.(((....)))(((((..(((..(((((.....)))))..)))..)))..)).....))).................................... ( -18.00) >DroSim_CAF1 11822 93 + 1 UGGCAGACUGCAGUCGCUGUUCCGGUUGGAAAUGCACUUUUCCUCCGCCGCA-------UCGCCUGCUAUCCCCAUUUCCCACUCCCUACUUCCCACUCC (((..((..((((.((.(((..(((..(((((......))))).)))..)))-------.)).))))..)).)))......................... ( -23.70) >consensus UGGCAGACUGCAGUCGCUGUUCCGGUUGGAAAUGCACUUUUCCUCCGCCGCA_______UCGCCUGCUAUCCCCUAUCCCCAAUCCCAACUUCCCACUCC .(((.(((....)))..(((..(((..(((((......))))).)))..))).........))).................................... (-15.99 = -16.10 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:57 2006