| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,937,351 – 3,937,457 |
| Length | 106 |
| Max. P | 0.823987 |
| Location | 3,937,351 – 3,937,457 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 86.61 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -20.91 |
| Energy contribution | -21.10 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.823987 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3937351 106 - 20766785 GAAUGGAAACGUUAAAAAAACGCAGUCCGUGGUACAAAACCUUCAGGAAUUUGACCACCACGGCGAGUGCUCUUUUGGUGACUCGGGAAAAAAGCGUUUGAAUUUG .((((....))))....((((((...(((((((.((((.((....))..))))...)))))))((((((((.....))).)))))........))))))....... ( -31.20) >DroSec_CAF1 21105 105 - 1 GAAUGGAAACGUUAAA-AAACGCAGUCCGUGGUACAAAACCUUCAGGAAUUUGACCACCACGGCGAGUGCUCUUUUGGUGACUCGGAAAAAACGCGUUUGAAUUUG .((((....))))...-((((((...(((((((.((((.((....))..))))...)))))))((((((((.....))).)))))........))))))....... ( -31.30) >DroEre_CAF1 21125 103 - 1 GAAUGUAUACAUUAAA-AAACGCGGUCCGUGGUAA--AAAUUUCGGGAAUUUGACCACCACUGCGAGUGUACUUUUGGUGACUUGGAAAAAAUGCGUUUGAAUGUA .......((((((...-(((((((.((((((((..--((((((...)))))).)))))(((((.(((....))).)))))....))).....))))))).)))))) ( -28.40) >DroYak_CAF1 21681 106 - 1 GAAUGAAAGCGUUAAAAAAACGCAGUCGGUGGUACAAAACCUCCAGGAAUGUGACCACCACGGCGUGUGUACUUUUGGUGACUCGAAAAAAACGCGUUUGAAUCUA ....((..(((((.....)))))..))(((((((((...((....))..))).))))))..(((((((....((((((....))))))...)))))))........ ( -29.50) >consensus GAAUGGAAACGUUAAA_AAACGCAGUCCGUGGUACAAAACCUUCAGGAAUUUGACCACCACGGCGAGUGCACUUUUGGUGACUCGGAAAAAACGCGUUUGAAUUUA .((((....))))....((((((.....(((((......((....))......))))).....(((((.(((.....))))))))........))))))....... (-20.91 = -21.10 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:38 2006