Locus 833

Sequence ID 2R_DroMel_CAF1
Location 3,908,632 – 3,908,733
Length 101
Max. P 0.857244
window1453

overview

Window 3

Location 3,908,632 – 3,908,733
Length 101
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 78.11
Mean single sequence MFE -23.82
Consensus MFE -15.91
Energy contribution -16.50
Covariance contribution 0.59
Combinations/Pair 1.20
Mean z-score -1.65
Structure conservation index 0.67
SVM decision value 0.81
SVM RNA-class probability 0.857244
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3908632 101 + 20766785
CUAUAAGCGGCAAUCAGAUGGUUCGGAAACAGAAUGCCAUAAAAAGCUGUAAAUA-CCAAAGCUUAAUACCC----AAUCUUGGUGACAAACCUGAACCCGAGCUU-
.......(((...((((((((((((....).))..)))))...(((((.......-....))))).......----....(((....)))..))))..))).....- ( -20.60)
>DroSec_CAF1 247 101 + 1
CUAUAAGCGGCAAUCAGAUGGUUCGGAAACAGAAUGCCAUAAAAAGCUGCAAAUA-GCUUAGUUUAAUACCC----AAUCUUGGCGACAAGCCUUAGUCCGAGCUU-
......(((((......((((((((....).))..))))).....)))))....(-(((..(.((((.....----......(((.....))))))).)..)))).- ( -23.30)
>DroSim_CAF1 247 101 + 1
CUAUAAGCGGCAAUCAGAUGGUUCGGAAACAGAAUGCCAUAAAAAGCUGCAAAUA-GCAAAGUUUAAUACCC----AAUCUUGGCGACAAGCCUUAGUCCGAGCUU-
((((..(((((......((((((((....).))..))))).....)))))..)))-)..((((((...((..----...((((....)))).....))..))))))- ( -23.10)
>DroEre_CAF1 247 100 + 1
CUAUAAGCGGCAAUCAGGUGGUUCGGAAACAGGAUGCCAUAAAAAGCUGCAAGUA-CCAAAGCUUAAUACCG----AGUCUUGGCUACAAGCUCCAG-CCGAGCUU-
......(((((......((((((((....)..)).))))).....)))))..(((-((((..(((......)----))..)))).)))((((((...-..))))))- ( -30.60)
>DroYak_CAF1 246 93 + 1
CUAUAAGCGGCAAUCAGAUGGUUCGGAAACAGGAUGCCAUAAAAAGCUGCAAAUA-ACAAAGUUUUAUACCGACAGAAUCUUGGCAACAAG------------CUU-
......(((((......((((((((....)..)).))))).....))))).....-.......................((((....))))------------...- ( -19.60)
>DroMoj_CAF1 848 94 + 1
CUAUACGCGGCAAUCAGAUGGUUGGGAAACAGAAUGCCAUAAAAAGCUGCAAUAUAGCG-AGUA-AGUACUGAGCAACAGCUGAGCUUAA-----------AGCUUU
......(((((......(((((..(....).....))))).....))))).....(((.-..((-((..((.(((....))).)))))).-----------.))).. ( -25.70)
>consensus
CUAUAAGCGGCAAUCAGAUGGUUCGGAAACAGAAUGCCAUAAAAAGCUGCAAAUA_GCAAAGUUUAAUACCC____AAUCUUGGCGACAAGCCU_AG_CCGAGCUU_
......(((((......(((((..(....).....))))).....))))).............................((((....))))................ (-15.91 = -16.50 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:32 2006