Locus 832

Sequence ID 2R_DroMel_CAF1
Location 3,903,960 – 3,904,053
Length 93
Max. P 0.630309
window1452

overview

Window 2

Location 3,903,960 – 3,904,053
Length 93
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 90.13
Mean single sequence MFE -26.75
Consensus MFE -21.57
Energy contribution -21.60
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -2.20
Structure conservation index 0.81
SVM decision value 0.20
SVM RNA-class probability 0.630309
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3903960 93 + 20766785
--------CGCACAAAGGCG-GGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUGC--------------UGGCAGUGCCAAAAGCCC
--------(((......)))-(((((.....)....((((((((........(..((((.....))))..)..((((.......--------------)))).).))))))))))) ( -25.80)
>DroSec_CAF1 9514 93 + 1
--------CGCACAAUGGCG-GGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUGC--------------UGGCAGUGCCAAAAGCCC
--------(((......)))-(((((.....)....((((((((........(..((((.....))))..)..((((.......--------------)))).).))))))))))) ( -25.80)
>DroSim_CAF1 13988 93 + 1
--------CGCACAAAGGCG-GGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUGC--------------UGGCAGUGCCAAAAGCCC
--------(((......)))-(((((.....)....((((((((........(..((((.....))))..)..((((.......--------------)))).).))))))))))) ( -25.80)
>DroEre_CAF1 9287 93 + 1
--------CGCACAAAGGCG-GGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUGC--------------UGGCAAUGCCAAAAGCCC
--------(((......)))-(((((.....)....(((((((.........(..((((.....))))..)..((((.......--------------))))...))))))))))) ( -25.20)
>DroYak_CAF1 9650 93 + 1
--------CGCACAAAGGCG-GGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUGC--------------UGGCAAUGCCAAAAGCCC
--------(((......)))-(((((.....)....(((((((.........(..((((.....))))..)..((((.......--------------))))...))))))))))) ( -25.20)
>DroAna_CAF1 9559 116 + 1
UGUUCAUAUGCCCAAAGGCGAGGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUCCGGCUGCCUCGUUUUUGGCAAUGCCAAAAGCCG
.........(((....)))((((((.((((......)))).)))........(..((((.....))))..).((((........))))..)))(((((((((...))))))))).. ( -32.70)
>consensus
________CGCACAAAGGCG_GGGCGAAAAUCAACUUUUUGGCCAACAUUAAUUAACGAAAUUUUCGUCGAAAGCCAACUUUGC______________UGGCAAUGCCAAAAGCCC
........(((......))).(((((.....)....(((((((.........(..((((.....))))..)..((((.....................))))...))))))))))) (-21.57 = -21.60 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:31 2006