Locus 831

Sequence ID 2R_DroMel_CAF1
Location 3,902,519 – 3,902,613
Length 94
Max. P 0.551680
window1451

overview

Window 1

Location 3,902,519 – 3,902,613
Length 94
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 79.87
Mean single sequence MFE -40.45
Consensus MFE -22.41
Energy contribution -22.99
Covariance contribution 0.59
Combinations/Pair 1.42
Mean z-score -1.83
Structure conservation index 0.55
SVM decision value 0.04
SVM RNA-class probability 0.551680
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3902519 94 - 20766785
ACUGCGUCUGCAGGUG---AUGGUGCAGGUGCGUCUGAGUCUCGGGCUUGAUGUGCAGUUGCUGCUGUAGCAGAAAGGCGGCUCCAGGAGGAGGAGG
.((((.(((((.....---((((((((.(..((((.((((.....))))))))..)...))).))))).)))))...))))((((....)))).... ( -33.30)
>DroVir_CAF1 23887 91 - 1
--UGC-CGUGCAGAUGA---UGAUGCAGGUGCGUUUGCGUCUCAGGCUUGAUGUGCAGCUGCUGUUGCAGCAAGAACGCCGCAGCCGGCGGUGGCGG
--.((-(.((.(((((.---.(((((....)))))..))))))))))......(((.(((((....))))).....((((((.....))))))))). ( -38.50)
>DroPse_CAF1 7760 94 - 1
CCUGCGGCGGCAGGUG---AUGAUGCAGAUGCGUCUGCGUCUCCGGUUUUAUGUGGAGCUGCUGCUGCAGCAGGAACGCGGCGCCUGGCGGUGGUGG
(((((.(((((((..(---(.((((((((....))))))))))(((((((....)))))))))))))).)))))....((.((((....)))).)). ( -45.60)
>DroMoj_CAF1 16839 94 - 1
--UGU-UGUGCAGAUGAUGAUGAUGCAGAUGCGUCUGCGUCUCAGGCUUGAUGUGCAGCUGCUGUUGCAGCAGGAAUGCCGCUGCCGGCGGCGGCGG
--...-((..((...(.(((.((((((((....)))))))))))..)....))..))((((((((((((((.((....)))))).)))))))))).. ( -44.70)
>DroAna_CAF1 8177 94 - 1
ACUGCUGCUGCAGGUG---AUGAUGGAGGUGGGUCUGCGUUUCGGGCUUGAUGUGCAGCUGUUGCUGCAGCAGAAAAGCGGCUCCGGGUGGUGGAGG
.(((((.((((((((.---..((((.(((....))).))))....))))....((((((....))))))))))...)))))(((((.....))))). ( -34.80)
>DroPer_CAF1 7728 94 - 1
CCUGCGGCGGCAGGUG---AUGAUGCAGAUGCGUCUGCGUCUCCGGUUUGAUGUGGAGCUGCUGCUGCAGCAGGAACGCAGCGCCUGGCGGUGGUGG
(((((.(((((((..(---(.((((((((....))))))))))((((((......))))))))))))).)))))....((.((((....)))).)). ( -45.80)
>consensus
_CUGCGGCUGCAGGUG___AUGAUGCAGAUGCGUCUGCGUCUCAGGCUUGAUGUGCAGCUGCUGCUGCAGCAGGAACGCGGCUCCCGGCGGUGGAGG
.((((..(((((.........((((((((....))))))))..........))))).(((((....)))))......))))((((.......)))). (-22.41 = -22.99 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:30 2006