Locus 830

Sequence ID 2R_DroMel_CAF1
Location 3,899,036 – 3,899,137
Length 101
Max. P 0.553138
window1450

overview

Window 0

Location 3,899,036 – 3,899,137
Length 101
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 80.12
Mean single sequence MFE -28.12
Consensus MFE -16.15
Energy contribution -15.77
Covariance contribution -0.39
Combinations/Pair 1.17
Mean z-score -1.75
Structure conservation index 0.57
SVM decision value 0.04
SVM RNA-class probability 0.553138
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3899036 101 - 20766785
CACAUUUAUUGUUUGGCAUUUUGAUCUGC---CAUUGCGGAUGAGCUGGCCAAUUUAUGCAAAUUUAAUUGGUUGCAAUUGUUGCGAUUCCAGCAG-CCACA-AAU-
........((((..(((....(.((((((---....)))))).)(((((((((((...........))))))(((((.....)))))..))))).)-)))))-)..- ( -28.20)
>DroPse_CAF1 4923 101 - 1
CACAUUUAUUGUUUGGCAUUCUGAUCCCC-U-CCACGGGGAUGAGCUGGGCAAUUUAUGCAAAUUUAAUUGGUUGCAACUGCUC-GCUCCAAGG--GAAUUAUCAA-
..(((..((((((..((....(.((((((-.-....)))))).)))..))))))..)))..(((((..((((..((........-)).))))..--))))).....- ( -31.10)
>DroEre_CAF1 4530 102 - 1
CACAUUUAUUGUUUGGCAUUUUGAUCUGC---CAGUGCGGAUGAGCUGGCCAAUUUAUGCAAAUUUAAUUGCUUGCAAUUGUUGCGAUUCGAGCAGGCCGCA-AUA-
..((((..(...((((((........)))---))).)..)))).((.(((((((((....)))))....((((((.(((((...))))))))))))))))).-...- ( -27.90)
>DroYak_CAF1 4605 103 - 1
CACAUUUAUUGUUUGGCAUUUUGAUCUGC---CAGUGCGGAUGAGCUGGCCAAUUUAUGCAAAUUUAAUUGGUUGCAAUUGUUGCGAUUCGAGCAGGCCCCA-UUGC
........(((((((((((...(((..((---((((........))))))..))).))))..........(((((((.....))))))))))))))......-.... ( -25.50)
>DroAna_CAF1 5217 97 - 1
CACAUUUAUUGUUUGGCAUUUUGAUCUGGGUACAG-GCGGAUGAGCUGGCCAAUUUAUGCAAAUUUAAUUGGUUGCAAUUGUUU--------GCCGGCUCCGUAAU-
...............((..((((.((((....)))-))))).((((((((.(((...(((((..........)))))...))).--------)))))))).))...- ( -24.90)
>DroPer_CAF1 4886 101 - 1
CACAUUUAUUGUUUGGCAUUCUGAUCCCC-U-CCACGGGGAUGAGCUGGGCAAUUUAUGCAAAUUUAAUUGGUUGCAACUGCUC-GCUCCAAGG--GAAUUAUCAA-
..(((..((((((..((....(.((((((-.-....)))))).)))..))))))..)))..(((((..((((..((........-)).))))..--))))).....- ( -31.10)
>consensus
CACAUUUAUUGUUUGGCAUUUUGAUCUGC___CAGUGCGGAUGAGCUGGCCAAUUUAUGCAAAUUUAAUUGGUUGCAAUUGUUG_GAUUCAAGCAGGCCCCA_AAA_
............(((((...((.((((((.......)))))).))...)))))....(((((..........))))).............................. (-16.15 = -15.77 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:29 2006