Locus 83

Sequence ID 2R_DroMel_CAF1
Location 1,336,169 – 1,336,289
Length 120
Max. P 0.998453
window172

overview

Window 2

Location 1,336,169 – 1,336,289
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.17
Mean single sequence MFE -40.28
Consensus MFE -37.64
Energy contribution -37.48
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -2.05
Structure conservation index 0.93
SVM decision value 3.11
SVM RNA-class probability 0.998453
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1336169 120 + 20766785
CCGCCCCAACUAAAUCAACCUGAGCUGCUCCCGUUGGCUGCUGGCCACCUGUCAGGUGCAUGUAGAUAAAUUUCCCAUCUAAUGGGGCCAGUCGCCCAAGGCAACGCAGAGCAGCCUCUU
.....................(((((((((.(((((.((((((((((((.....))))...............(((((...)))))))))))......)).)))))..)))))).))).. ( -40.60)
>DroSec_CAF1 54691 120 + 1
CCGCCCCAACUAAAUCAACCUGAGCUGCUCCCGUUGGCCACUGGCCACCUGUCAGGUGCAUGUAGAUAAAUUUCCCAGCUAAUGGGGCCAGUCGCCCAAGGCAACGCAGAGCAGCCUCUU
.....................(((((((((.(((((((.((((((((((.....))))...............((((.....)))))))))).)))......))))..)))))).))).. ( -40.70)
>DroSim_CAF1 32881 120 + 1
CCGCCCCAACUAAAUCAACCUGAGCUGCUCCCGUUGGCCACUGGCCACCUGUCAGGUGCAUGUAGAUAAAUUUCCCAGCUAAUGGGGCCAGUCGCCCAAGGCAACGCAGAGCAGCCUCUU
.....................(((((((((.(((((((.((((((((((.....))))...............((((.....)))))))))).)))......))))..)))))).))).. ( -40.70)
>DroEre_CAF1 36174 120 + 1
CCGUCCCAACUAAAUCAACCUGAGCUGCUCCCGUUGGCUGCUGGCCACCUGUCAGGUGCAUGUAGAUAAAUUUCCCAGCUAAUGGGGCCAGUCGCCCAAGGCAACGGACAGCAGCCUCUU
.....................((((((((.((((((.(((((((.((((.....))))......((......))))))).....((((.....)))).)).))))))..))))).))).. ( -41.70)
>DroYak_CAF1 23353 120 + 1
CCGUCCCAACUAAAUCAACCUAAGCUGCUCCCGUUGGCUACUGGCUACCUGUCAGGUGCAUGUAGAUAAAUUUCCUAGCUAAUGGGGCCAGUCGCCCAAGGCAACGGACAGCAGCCUCUU
..((((.................((((..((((((((((((((((.....))))).........((......)).)))))))))))..)))).(((...)))...))))........... ( -37.70)
>consensus
CCGCCCCAACUAAAUCAACCUGAGCUGCUCCCGUUGGCUACUGGCCACCUGUCAGGUGCAUGUAGAUAAAUUUCCCAGCUAAUGGGGCCAGUCGCCCAAGGCAACGCAGAGCAGCCUCUU
.......................(((((((.....(((.((((((((((.....))))...............((((.....)))))))))).)))...(....)...)))))))..... (-37.64 = -37.48 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:17 2006