Locus 822

Sequence ID 2R_DroMel_CAF1
Location 3,870,792 – 3,870,911
Length 119
Max. P 0.876667
window1437

overview

Window 7

Location 3,870,792 – 3,870,911
Length 119
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 92.86
Mean single sequence MFE -57.15
Consensus MFE -47.41
Energy contribution -47.48
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -2.12
Structure conservation index 0.83
SVM decision value 0.90
SVM RNA-class probability 0.876667
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3870792 119 - 20766785
ACAUGGUCCUGUGGCUGUGGCACUGAGCGUUGUCCGCUCGCGCCGCUCGGCCACCCGACGGGCGGGGCUCAGAGCCUCCAGCUUGUCGUAGGCGCAGAUUAUCUUCUUGCGGAUCAUGA
.((((((((.(((((((((((.(.(((((.....)))))).)))))..)))))).(((((((((((((.....))).)).))))))))...(((.(((......)))))))))))))). ( -61.60)
>DroSec_CAF1 126549 119 - 1
ACAGGGUCCUGUGGCUGCGGCGCUGAGCGUUGUCCGCUCGCGCCUCUUGGCCACCCGACGGGCGGGGCUCAGAGCCUCCAGCUUGUCGUAGGCGCAGAUUAUCUUCUUGCGGAUCAUGA
.((.(((((.(((((((.(((((.(((((.....)))))))))).)..)))))).(((((((((((((.....))).)).))))))))...(((.(((......))))))))))).)). ( -58.80)
>DroEre_CAF1 127571 119 - 1
ACAGGGUCCUGUGGCUGUGGGGCUUAACGUUGUCCGCUCACGCCGCUUGGCCACCCGACGGGCGGGGCUCAGGGCCUCCAGCUUGUCGUAGGCGCAGAUGAUCUUCUUGCGGAUCAUGA
.((.(((((.(((((((.(((((........)))).).)).)))))...(((...(((((((((((((.....))).)).))))))))..)))(((((......)).)))))))).)). ( -52.10)
>DroYak_CAF1 124924 119 - 1
ACAGGGUCCUGUGCCUGCGGGGCCUGACGUUGUCCGCUCACGCCGCUUGGCCACCCGACGGGCGGGGCUGAGAGCCUCCAGCUUGUCGUAGGCGCAGAUGAUCUUCUUGCGGAUCAUGA
........((((((((((((((((...((.(((......))).))...)))).)).((((((((((((.....))).)).)))))))))))))))))(((((((......))))))).. ( -56.10)
>consensus
ACAGGGUCCUGUGGCUGCGGCGCUGAACGUUGUCCGCUCACGCCGCUUGGCCACCCGACGGGCGGGGCUCAGAGCCUCCAGCUUGUCGUAGGCGCAGAUGAUCUUCUUGCGGAUCAUGA
.((.(((((.(((((.((((.((........))))))....)))))...(((...(((((((((((((.....))).)).))))))))..)))(((((......)).)))))))).)). (-47.41 = -47.48 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:16 2006