Locus 816

Sequence ID 2R_DroMel_CAF1
Location 3,854,687 – 3,854,787
Length 100
Max. P 0.599108
window1428

overview

Window 8

Location 3,854,687 – 3,854,787
Length 100
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 81.45
Mean single sequence MFE -25.22
Consensus MFE -15.85
Energy contribution -15.79
Covariance contribution -0.06
Combinations/Pair 1.12
Mean z-score -1.74
Structure conservation index 0.63
SVM decision value 0.13
SVM RNA-class probability 0.599108
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3854687 100 - 20766785
UAAUGAAAUUUGCGUGAUUCAAGCGGAGCACGCACUAGGCGAUGCCAAUAGCAGCAACAACAAUCGCCGGAGGCGUUCUCAAUACAACAGCA---ACAGCUAC
.........((((((.......)).(((.((((.((.((((((...................))))))..)))))).))).........)))---)....... ( -23.61)
>DroPse_CAF1 103986 88 - 1
UAAUGAAAUUUGCGUGAUUCAAGCAGAGCACGCACUAGGCGAUGCCAAUAA---CAACAACAAUUGCCAUUGGCAUGCC------AGGG------GCAACAAC
..........((((((.(((.....)))))))))((.(((.((((((((..---(((......)))..)))))))))))------.))(------....)... ( -28.60)
>DroEre_CAF1 111616 100 - 1
UAAUGAAAUUCGCGUGAUUCAAGCGGAGCACGCACUAGGCGAUGCCAAUAGCAGCAACAACAAUCGCCGGAGGCGUUCUCAAUACAACAGCA---ACAGCUAC
..........(((.........)))(((.((((.((.((((((...................))))))..)))))).)))........(((.---...))).. ( -25.21)
>DroYak_CAF1 108774 103 - 1
UAAUGAAAUUUGCGUGAUUCAAGCGGAGCACGCACUAGGCCAUGCCAAUAGCAGCAACAACAAUCGCCGGAGGCGUUCUCAAUACAACAGCAACAACAGCUAC
..........((((((.(((....))).))))))...(((...)))..((((.............(((...)))(((........)))..........)))). ( -19.90)
>DroAna_CAF1 105351 103 - 1
UAAUGAAAUUUGCGUGAUUGAAGCCGAGCACGCACUAGGCGAUGCCAAUACCAGCAACAACAAUCGCCGGAGGCGUAUUCAAUACAACAAGCACGGCAGCAAC
.........((((..(((((..(((.((......)).)))(.(((........))).)..)))))((((...((................)).)))).)))). ( -25.39)
>DroPer_CAF1 104911 88 - 1
UAAUGAAAUUUGCGUGAUUCAAGCAGAGCACGCACUAGGCGAUGCCAAUAA---CAACAACAAUUGCCAUUGGCAUGCC------AGGG------GCAACAAC
..........((((((.(((.....)))))))))((.(((.((((((((..---(((......)))..)))))))))))------.))(------....)... ( -28.60)
>consensus
UAAUGAAAUUUGCGUGAUUCAAGCGGAGCACGCACUAGGCGAUGCCAAUAGCAGCAACAACAAUCGCCGGAGGCGUUCUCAAUACAACAGCA___ACAGCAAC
..(((......(((((.(((.....))))))))....((((((...................)))))).....)))........................... (-15.85 = -15.79 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:08 2006