Locus 809

Sequence ID 2R_DroMel_CAF1
Location 3,823,195 – 3,823,289
Length 94
Max. P 0.985619
window1415

overview

Window 5

Location 3,823,195 – 3,823,289
Length 94
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 93.21
Mean single sequence MFE -23.38
Consensus MFE -21.06
Energy contribution -20.70
Covariance contribution -0.36
Combinations/Pair 1.14
Mean z-score -2.02
Structure conservation index 0.90
SVM decision value 2.01
SVM RNA-class probability 0.985619
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3823195 94 + 20766785
-----CCAGCAUGUACGAGUGAUAUAUAGAUGAUUUGUAUAUGAAUAUGCGAUAGGCAUCUAAAGCACAUAAUGCUAAAUUUAUGAGCCGGCUGCACAC-
-----....(((((((((((.((......)).)))))))))))....((((...(((.(((((((((.....))))....))).)))))...))))...- ( -22.80)
>DroSec_CAF1 79638 95 + 1
-----CCAGCAUGUGCGAGUGAUAUAUAGAUGAUUUGUAUAUGAAUAUGCGAUAGGCAUCUAAAGCACAUAAUGCUAAAUUUAUGAGCCGGCUGCACACC
-----......(((((.(((......((((((..(((((((....)))))))....))))))..((.(((((........))))).))..)))))))).. ( -24.90)
>DroSim_CAF1 96714 100 + 1
UGUGUCCAGCAUGUACGAGUGAUAUAUAGAUGAUUUGUAUAUGAAUAUGCGAUAGGCAUCUAAAGCACAUAAUGCUAAAUUUAUGAGCCGGCUGCACACC
.((((.((((((((((((((.((......)).))))))))))............(((.(((((((((.....))))....))).))))).)))).)))). ( -27.10)
>DroEre_CAF1 80417 94 + 1
-----CCAGCAUAUACAAGUGAUAUAUAGAUGAUUUGUAUAUGAAUAUGCGAUAGGCAUCUAAAGCAUAUAAUGCUAAAUUUAUGAGCCGGCUGCACAC-
-----....(((((((((((.((......)).)))))))))))....((((...(((.((((((((((...)))))....))).)))))...))))...- ( -23.50)
>DroYak_CAF1 76981 94 + 1
-----CCAGCAUGUACGAGUGAUAUAUAGAUGAUUUGUAUAUGAAUAUGCGAUAGCCAUCUAAAGCACAUAAUGCUAAAUUUAUGAGCCGGCUGCACAC-
-----....(((((((((((.((......)).)))))))))))....((.(.(((((.......((.(((((........))))).)).)))))).)).- ( -21.70)
>DroAna_CAF1 77628 93 + 1
-----AC-ACAUAUCCAAGUGAUAUAUAGAUGAUUUGUAUAUGAAUAUGCGAUAGGCAUCUAAAGCACAUAAUGUUAAAUUUAUGAGCCUGCUGCACUC-
-----..-.(((((.(((((.((......)).))))).)))))....((((.(((((.((((((..((.....))....)))).))))))).))))...- ( -20.30)
>consensus
_____CCAGCAUGUACGAGUGAUAUAUAGAUGAUUUGUAUAUGAAUAUGCGAUAGGCAUCUAAAGCACAUAAUGCUAAAUUUAUGAGCCGGCUGCACAC_
.........(((((((((((.((......)).)))))))))))....((((...(((.(((((((((.....))))....))).)))))...)))).... (-21.06 = -20.70 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:55 2006