| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,813,270 – 3,813,364 |
| Length | 94 |
| Max. P | 0.962785 |
| Location | 3,813,270 – 3,813,364 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 75.76 |
| Mean single sequence MFE | -22.72 |
| Consensus MFE | -17.97 |
| Energy contribution | -18.83 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.962785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3813270 94 + 20766785 GGCCGGCUU---UGCCUAUGCAUGUAUUAGUAUGCGUAGUUAAGUUCUGACGCCAGAACUCUCAUAGCCUAGAA---CACCCAU--ACCCU------------CCCACUCAGCC (((.((((.---((.(((((((((......)))))))))...(((((((....)))))))..)).))))..(..---....)..--.....------------........))) ( -25.20) >DroSec_CAF1 69609 107 + 1 GGCCGGCUU---UGCCUAUGCAUGUAUUAGUAUGCGUAGUUAAGUUCUGACGCCAGAACUCUCAUAGCCCAGAAA--CUCCCAU--ACCACCCCCCCACUCAGCCCACUCAGCC (((.((((.---((.(((((((((......)))))))))...(((((((....)))))))..)).))))..(...--..)....--................)))......... ( -25.10) >DroSim_CAF1 84950 94 + 1 GGCCGGCUU---UGCCUAUGCAUGUAUUAGUAUGCGUAGUUAAGUUCUGACGCCAGAACUCUCAUAGCCCAGAAG--CUCCCAU--ACCC-------------CCCACUCAACC ((..(((((---((((((((((((......)))))))))...(((((((....)))))))......))...))))--)).))..--....-------------........... ( -24.90) >DroEre_CAF1 70733 89 + 1 GGCCGGCUU---UGCCUAUGCAUGUAUUAGUAUGCGUAGUUAAGUUCUGACGCCAGAACUC----AGCC-----------CCAUCAGCCCC-------AUCAGCCCACUCAGCC (((.((((.---...(((((((((......)))))))))...(((((((....))))))).----))))-----------......((...-------....)).......))) ( -25.10) >DroWil_CAF1 110652 98 + 1 GCCCCCCUCUGAUUUCUAUGCAUGUAUUAGUAUGCGUAGUUAAGUUCUGACGCCGUACCC----GAACCUAAAC-UAAACCCAC--CUUCC-------AUCUUCC--CUUCCUC ...............(((((((((......)))))))))(((.((((.(.........).----)))).)))..-.........--.....-------.......--....... ( -11.30) >DroYak_CAF1 66846 92 + 1 GGCCGGCUU---UGCCUAUGCAUGUAUUAGUAUGCGUAGUUAAGUUCUGACGCCAGAACUCUCAUAGCCUA------CUCCCAU--GCCCC-------AA----CCACUCAGCC (((.((((.---((.(((((((((......)))))))))...(((((((....)))))))..)).))))..------(......--)....-------..----.......))) ( -24.70) >consensus GGCCGGCUU___UGCCUAUGCAUGUAUUAGUAUGCGUAGUUAAGUUCUGACGCCAGAACUCUCAUAGCCUAGAA___CUCCCAU__ACCCC_______AU___CCCACUCAGCC ....((((.......(((((((((......)))))))))...(((((((....))))))).....))))............................................. (-17.97 = -18.83 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:49 2006