Locus 794

Sequence ID 2R_DroMel_CAF1
Location 3,775,973 – 3,776,070
Length 97
Max. P 0.545169
window1391

overview

Window 1

Location 3,775,973 – 3,776,070
Length 97
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 82.67
Mean single sequence MFE -33.18
Consensus MFE -19.97
Energy contribution -19.81
Covariance contribution -0.16
Combinations/Pair 1.17
Mean z-score -1.86
Structure conservation index 0.60
SVM decision value 0.02
SVM RNA-class probability 0.545169
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3775973 97 - 20766785
CACCUGGCCAAGCGGAGUCUAAUUGAGGGGCGGCGCUG---------GAUAUCGGGCCUAGAGAAAGGUCAAAACAGCGCAGCCCAAAACGUAAAUCCCUGCCACA
....((((..((.(((...........((((.((((((---------.......(((((......)))))....)))))).))))..........))))))))).. ( -36.20)
>DroSec_CAF1 31915 97 - 1
CAUCUGGCCAAGAGGACUCUAAUUGAGGGGCGGCGCUG---------GAUAUCGGGCCUAGAGAAAGGUCAAAACAGCGCAGCCCAAAACGUAAAUCCCUGCUACA
....((((..((.((((((.....)))((((.((((((---------.......(((((......)))))....)))))).))))..........))))))))).. ( -36.30)
>DroSim_CAF1 54085 97 - 1
CAUCUGGCCAAGAGGACUCUAUUUGAGGGGCGGCGCUG---------GAUAUCGGGCCUAGAGAAAGGUCAAAACAGCGCAGCCCAAAACGUAAAUCCCUGCUACA
....((((..((.((((((.....)))((((.((((((---------.......(((((......)))))....)))))).))))..........))))))))).. ( -36.30)
>DroEre_CAF1 33326 106 - 1
CACCUGGCCAAGCGCAGCUUAACCGAGGGGCGACGCUCACUGACCACCAUAUCGGGCCUGGAGAAAGGUCAAAACAGCGCAGUCCAAAGCUCAAGUCCCUGGUCCA
.....((((((((...)))).....((((((...(((.((((............(((((......))))).........))))....)))....)))))))))).. ( -28.10)
>DroYak_CAF1 26402 106 - 1
CACCUGGCCAAUCGAAGUUUAAUCGAGGGGCGACGCUCACUGACCACCAUAUCGGGCCUGGAGAAAGGUCCAAACAGCGCUGUCCAAAACUCAAAUCCCUGGUACA
.(((.((....((((.......)))).(((((.((((....((........))((((((......))))))....)))).)))))............)).)))... ( -29.00)
>consensus
CACCUGGCCAAGCGGAGUCUAAUUGAGGGGCGGCGCUG_________GAUAUCGGGCCUAGAGAAAGGUCAAAACAGCGCAGCCCAAAACGUAAAUCCCUGCUACA
...........................((((.((((((................(((((......)))))....)))))).)))).....(((......))).... (-19.97 = -19.81 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:32 2006