Locus 793

Sequence ID 2R_DroMel_CAF1
Location 3,773,500 – 3,773,608
Length 108
Max. P 0.608013
window1390

overview

Window 0

Location 3,773,500 – 3,773,608
Length 108
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 76.05
Mean single sequence MFE -32.82
Consensus MFE -19.49
Energy contribution -20.47
Covariance contribution 0.97
Combinations/Pair 1.18
Mean z-score -1.45
Structure conservation index 0.59
SVM decision value 0.15
SVM RNA-class probability 0.608013
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3773500 108 - 20766785
GCAAAAUUUGCAUUUCACU-CUGCCGUUCACUGCACUUGGCCGCGUAAUUAGGCGCA----CAACUCGC-AGCACGGCUUUGAUGUGCCGUCCUGCGAAUUGGGCUAAGUAAGG----
(((......(((.......-.))).......)))((((((((((((......)))).----(((.((((-((.(((((........))))).)))))).)))))))))))....---- ( -43.62)
>DroPse_CAF1 23732 112 - 1
GCAC-AUUUGCAUUUCUCCGUUUCCAUCCACUGCACUUGUCGGCGUAAUUAGGCGCCGCCGAGACUC-----UACGGCUUUGAUGUGCGCUGCUCUUAACUGGGCUAAGUAUAGCACC
((((-(((.((........((...........)).((((.((((((......)))))).))))....-----....))...)))))))((((..((((.......))))..))))... ( -32.80)
>DroSec_CAF1 29536 106 - 1
GCAA-AUUUGCAUUUCACU-CCGCUGUUCACUGCACUUGGCCGCGUAAUUAGGCGCA----CAACUCU--GCCGCGGCUUUGAUGUGCCGUCCUGCGAAUUGGGCUAAGUAAGG----
(((.-...)))........-((((........))((((((((((((......)))).----(((.((.--((.(((((........)))))...)))).)))))))))))..))---- ( -34.60)
>DroEre_CAF1 30761 94 - 1
GCAA-AUUUGCAUUUC-------------ACUGCACUUGGCCGCGUAAUUAGGCGCA----CAACUCU--UCCACGGCUUUGAUGUGCCGUCCUGCGAAUUGGGCUAAGUAAGG----
(((.-...))).....-------------.((..((((((((((((......)))).----(((.((.--...(((((........))))).....)).))))))))))).)).---- ( -30.90)
>DroYak_CAF1 23831 96 - 1
GCAA-AUUUGCAUUUC-------------ACUGCACUUGGCCGCGUAAUUAGGCGCA----CAACUCUUUUCCACGGCUUUGAUGUGCCUUCCUGGGAAUUCGGCUAAGUAAGG----
(((.-...))).....-------------.((..((((((((((((......)))).----.......((((((.(((........)))....))))))...)))))))).)).---- ( -30.10)
>DroAna_CAF1 28622 105 - 1
ACAA-AUUUGCAUUUCACU-UUUCCAUCCACUGCACUUGGCGGCGUAAUUAGGCCCG----AAGCCA---GAUUUGGCUUUGAUGUGCUACGUUUCGAAUUGGGCUAAGUAAGG----
....-.(((((........-........(.((((.....)))).)......((((((----(..(.(---(((.((((........)))).)))).)..)))))))..))))).---- ( -24.90)
>consensus
GCAA_AUUUGCAUUUCACU__U_CC_U_CACUGCACUUGGCCGCGUAAUUAGGCGCA____CAACUCU__GCCACGGCUUUGAUGUGCCGUCCUGCGAAUUGGGCUAAGUAAGG____
(((.....)))...................((..((((((((((((......)))).................(((((........)))))...........))))))))..)).... (-19.49 = -20.47 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:31 2006